Hi
I have a problem with the removing features from sequence exception:
Feature Peptide org.biojava.bio.proteomics.Digest [1,6]
java.util.ConcurrentModificationException
at
java.util.AbstractList$Itr.checkForComodification(AbstractList.java:444)
at java.util.AbstractList$Itr.next(
Hi -
The problem is that you are trying to remove a feature while iterating over the
features. The basic Iterator contract means that an iterator locks any collection it
is iterating over. If you attempt to add or remove any part of the collection you will
get an exception as the iterator wont
Hi Robert,
Could you include the complete stack-trace? These exceptions come from
the collections framework when a collection you are iterating over is
modified with add/remove directly, rather than through the iterator.
However, without the full stack-trace, it's going to be hard to know
exac
Could anyone give me an example where you can remove features from a
Sequence Object.
"Schreiber, Mark" wrote:
>
> Hi -
>
> The problem is that you are trying to remove a feature while iterating over the
> features. The basic Iterator contract means that an iterator locks any collection it
> i
> "Robert" == Robert Stones <[EMAIL PROTECTED]> writes:
Robert> Could anyone give me an example where you can remove
Robert> features from a Sequence Object.
Try something like
import java.io.*;
import java.util.*;
import org.biojava.bio.*;
import org.biojava.bio.seq.*;
import org.b
hi -
i've been trying out the PairwiseAlignment demo to align to piece of
genomic dna (after changing the alphabet from protein to dna).
i would like to view the optimum path generated by the viterbi algorithm
but i seem to be a bit stumped as to how to extract this from the
statepath. it is ex
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