[Biojava-l] Display components of an assembly (contig) multilined

Dear all, i would like to display the component sequences of assemblies (contigs) in one line each. The contig is produced in an EMBL like format from several tables of an oracle database and then imported via SeqIOTools.readEMBL(). The sequences in the resulting SequenceIterator are of type S

[Biojava-l] Biojava Perl

Dear Friends I am having solaries 6.0 and I tried to download the BioJava in that system. It got downloaded. But it is not installing. Any one help me how to install. Is it a need to have Java for Biojava installation. Kindly help me Thanks in advance -- ___

RE: [Biojava-l] Biojava Perl

Hi - BioJava is not a self installing system, you should probably take a look at the instructions on http://www.biojava.org/docs/started.html - Mark > -Original Message- > From: arun a [mailto:[EMAIL PROTECTED] > Sent: Thursday, 24 July 2003 10:04 p.m. > To: [EMAIL PROTECTED] > Subject:

[Biojava-l] Sequence retrieval

I am new to this list, so my question might have already been discussed, but I cannot find any reference to it in the archive, so here goes: I am trying to find a quick java-only way to retrieve sequences from a blast database. I am writing a program that needs to obtain large amounts of seque