Re: [Biojava-l] Biojava GUI and Applets

2003-09-19 Thread Matthew Pocock
Ah - I think I see potential problems. Firstly, you should have just one archive attribute with a list of archives seperated by spaces and optional white-space. Secondly, you are using file locations for the jars - they need to be URLs that are relative to your html page that contains the apple

Re: [Biojava-l] position weight matrix

2003-09-19 Thread Matthew Pocock
Hi Brian, If you get an up-to-date copy of biojava from cvs (now) or the nightly builds (tomorrow) then you will find that WeightMatrixAnnotator now allows you to specify a ScoreType. The one you want is ScoreType.ODDS. You will need a different threshold than you are used to - effectively it'

[Biojava-l] Biojava GUI and applets

2003-09-19 Thread [EMAIL PROTECTED]
Hi, Thanks Mathew! I followed your instructions I tried And I put .jar files into the same directory as the applet and html page But now, errors have changed: java.security.AccessControlException: access denied (java.util.ProperyPermission entityExpansionLimit read) ... rethrown a