Re: [Biojava-l] Dot states in SimpleMarkovModel

2003-11-03 Thread Matthew Pocock
Hi, This is a known (and fixed) bug on the 1.3 release. Guys, could we get that maintainance release out? Matthew harald malming wrote: hi there, can anyone tell me if it is possible to have more than one dot state in a simpleMarkovModel. As soon as I add a second dot state, the : "DP dp=DPF

[Biojava-l] SequencePoster

2003-11-03 Thread Valentin Ruano
Hi everyone, I plan to develop an small bioinformatic application using Java involving some Swing UI. Firstly I would like to be able to show a single sequence and multi sequence alignments. Since the sequence could be rather long, using a multiline display, such as SequencePoster, is best. Th

RE: [Biojava-l] Serialization of SimpleSequences

2003-11-03 Thread Schreiber, Mark
This problem is now resolved in the biojava1.3 branch, Features are serializing nicely and still behaiving like features at the end of it all. I'm still working on a solution in biojava-live which involves delving into the bowels of the ontology Term implementations to find out why they won't d