Hi,
I'd like to first thank you all for your great job on
this project.
I'm using biojava in a project to store some
sequencing result.
In my application the user upload sequences from a
fasta file, and I like to build an alignment from it.
With your project, I can easily parse the fasta file
a
Hi Eric -
I'm not sure if this will solve your problem but you could make an
Alignment object from the sequences and then use the methods of
DistributionTools to get a Distribution object for each position in the
Alignment. These distributions will tell you the frequency of each base at
each p
