Hi!
I just found that the class org.biojava.utils.ProcessTools is not part
of the source and binary distribution of BioJava 1.3.1, but they are
part of the biojava-live CVS. Are they missing by accident?
By the way, what is the recommended way to compile BioJava 1.3.1, since
biojava-1.3.1.tar.
BioJava 1.3.1 was an update release of 1.3. There are a number of things
that biojava live contains that 1.3.1 does not. The goal was to release a
1.3.2 but unfortunately I moved countries and jobs etc so the plan slipped
somewhat. It now seems unlikely that there will be any further updates of
it seems that blast parser only check blast version on the first line of
blast output, and i tricked her by changing the first line to 2.2.3,
while i use version of 2.2.8.
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Hi -
The BlastLikeSAXParser checks the version of blast against a list it is
known to support. If you call the .setModeLazy() method then the parser
doesn't check the version. If you do this you should check the results
carefully.
If people know of BLAST versions that the parser reads reliably
