Re: [Biojava-l] Heat map gradients

A friend of mine in human computer interaction warns against such scales (I found out when I asked him this exact same question). He prefers a discrete scale of say 7 colors, which are clearly labeled with their bounds. This is because we are not very good at judging the significance of subtle co

Re: [Biojava-l] Heat map gradients

p.s. is their anything like 'matrix2png' for biojava? On Mon, 7 Jun 2004 [EMAIL PROTECTED] wrote: >Hi - > >Slightly off topic but, > >I am making an application that will display a heat map based on the value >of a variable. I'm wondering if anyone has some sample code for generating >a colo

Re: [Biojava-l] Heat map gradients

On Mon, Jun 07, 2004 at 12:00:19PM +0800, [EMAIL PROTECTED] wrote: > Hi - > > Slightly off topic but, > > I am making an application that will display a heat map based on the value > of a variable. I'm wondering if anyone has some sample code for generating > a color on a gradient between color

Re: [Biojava-l] Heat map gradients

One of the problems is that we do not perceive gradient changes in a linear fashion. -Patrick McConnell Duke Bioinformatics Shared Resource Duke Comprehensive Cancer Center [EMAIL PROTECTED]

[Biojava-l] BioJava, BioSQL versions

Can anybody tell me what versions of BioJava work with what versions of BioSQL? Thanks Gang ___ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l

[Biojava-l] reading sequence files

Hi, I have problems to extract sequence data from files (Genbank or EMBL) using BioJava 1.3; I can get sequence names or annotations, but when I try to get the sequence itself, I get a null pointer exception! Can anybody help? Thanks .. Clemens -- --- Clemens Steegb

Re: [Biojava-l] reading sequence files

Hi - Could you post your code and an example GenBank or EMBL accession as well so we can get an idea of what might be going wrong? Alternatively you might want to look at http://www.biojava.org/docs/bj_in_anger/ for some examples of sequence I/O - Mark Mark Schreiber Principal Scientist (Bio

Re: [Biojava-l] BioJava, BioSQL versions

My understanding is that biojava 1.3.x is not compatable with the more recent versions of biosql. To use the current biosql I reccommend getting one of the nightly snapshots or the pre release version of biojava 1.4 - Mark Mark Schreiber Principal Scientist (Bioinformatics) Novartis Institute