Maximilian Haussler wrote:
Hi everyone,
why is ViewSequence an implementation of the Unchangeable interface?
Isn't a view (among others) meant for adding features to an otherwise
unchangeable sequence?
Exactly what a view is for, is a question you can argue a lot about i
guess =). But, just from
Hi everyone,
I'm quite new to biojava and to the mailinglist so I'm not sure if my
question has been answered before, although I did look into the older
mailinglist entries and found nothing...
Anyway, I'm writing a little java programn to align two protein sequences,
using the pam250 matrix. S
Very good question!
Maybe the idea was to make views on views. Seems a bit odd though. Does
anyone know what the ideal solution here is?
The Change support in biojava does derive from the standard java system
but offers some more flexibility about pre and post condition changes and
vetos. On t
Hello,
[I am a new user of BioJava, so please forgive any obvious errors I may
make.]
I was trying to modify the PairwiseAlignment demo to show the
traditional output of alignment programs, i.e. the aligned sequences
alongside one another. It seems this information is available from:
StatePath
Maximilian Haussler wrote:
Thanks for your extensive reply. I did exactly that, but (hack hack)
did not use changeable but standard java change support. Anyways, it's
no use.
I'm using a sequence panel, but something that has to redraw sometimes
when there are new features. It is a sequence pane
Some examples are at:
http://www.biojava.org/docs/bj_in_anger/profileHMM.htm
and
http://www.biojava.org/tutorials/dp-doc.html
Rahul Karnik <[EMAIL PROTECTED]>
Sent by: [EMAIL PROTECTED]
09/20/2004 03:40 AM
To: [EMAIL PROTECTED]
cc: (bcc: Mark Schreiber/GP/Novartis
Does anyone have a current BioSQL schema that matches the BioJava
bindings? Preferably one for Oracle.
Thanks,
Mark
Mark Schreiber
Principal Scientist (Bioinformatics)
Novartis Institute for Tropical Diseases (NITD)
10 Biopolis Road
#05-01 Chromos
Singapore 138670
www.nitd.novartis.com
phone
