hello all,
I asked JD if a proper solution to this would be to rethrow Exception as
such:
} catch (Exception e) {
System.out.println("Exception found in GenbankSequenceDB --
getSequence");
System.out.println(e.toString());
ExceptionFound = true;
IOExceptionFound = true;
Certainly. I was asking the list to inquire whether this was an
intentional design choice (i.e. making the class noisy regardless of
calling class) or whether anyone would be averse to fixing it to just
simply be:
>> } catch (Exception e) {
>> ExceptionFound = true;
>> IOExcepti
On 21 Nov 2004, at 08:52, James Diggans wrote:
Certainly. I was asking the list to inquire whether this was an
intentional design choice (i.e. making the class noisy regardless of
calling class) or whether anyone would be averse to fixing it to just
simply be:
>> } catch (Exception e) {
>>
Mark Schreiber wrote:
> Does anyone have a current BioSQL schema that matches the BioJava
> bindings? Preferably one for Oracle.
AFAIK, current BioSQL CVS matches what BioJava expects -- Hilmar
recently added the extra table that BioJava uses. I've also attached
the Oracle schema that I've used
One way to do this would be to create a Unicode alphabet (or ASCII
alphabet) and read the file into a Sequence of that Alphabet, create a
Distribution, compare it to the DNA/ RNA/ Protein distributions using
DistributionTools and then convert it to the correct Alphabet.
Even more ambitious woul
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Hash: SHA1
All, I'm attempting to use BioJava to parse the output from NCBI's
commandline MegaBLAST and receiving an error:
'Could not recognise the format of this file as one supported by the
framework.'
in a SAXException thrown by BlastLikeSAXParser. An old pos
