[Biojava-l] setting up biojava and running a program for translate

2005-04-24 Thread MEENA HARIHARAN
Hi I installed jdk1.3.1_15 in c:\jdk1.3.1_15. I also downloaded xerces.jar, bytecode-0.91.jar, biojava-1.3.1, and jakarta-regexp.jar in C:\biojava\downloads When I try to run c:\biojava\Translate.java I get the following errors "C:\biojava\Translate.java:1: package org.biojava.bio.symbol does not

RE: [Biojava-l] setting up biojava and running a program for translate

2005-04-24 Thread Richard HOLLAND
Include the downloaded jar files on your classpath when running any programs using them. Otherwise you will get exactly the errors you mention below. Richard Holland Bioinformatics Specialist GIS extension 8199 - This email is confidential and may be pri

RE: [Biojava-l] setting up biojava and running a program for translate

2005-04-24 Thread mark . schreiber
There is help on setting your classpath here: http://www.biojava.org/started.html "Richard HOLLAND" <[EMAIL PROTECTED]> Sent by: [EMAIL PROTECTED] 04/25/2005 02:16 PM To: "MEENA HARIHARAN" <[EMAIL PROTECTED]>, cc: (bcc: Mark Schreiber/GP/Novartis) Subject:

[Biojava-l] BioJava/BioSQL on Oracle

2005-04-24 Thread Richard HOLLAND
I've committed some changes to biojava-live which make BioJava compatible with BioSQL when the latter is running on Oracle 9i or greater and using the official schema as per the biosql-schema CVS. This involved adding an autodetect function to detect whether Clobs were used in biosequence or not