[Biojava-l] topic about RestrictionEnzyme

2005-05-10 Thread zhenqing ye
Hi, I have tried biojava-1.4pre1.zip for my works, but there are some bugs(i am not very sure) in RestrictionEnzyme related classes. I have written the following codes: ... RestrictionEnzyme enzyme = RestrictionEnzymeManager.getEnzyme("Bsp24I"); System.out.println(enzyme.getN

Re: [Biojava-l] topic about RestrictionEnzyme

2005-05-10 Thread mark . schreiber
Hi - This does look like an error although I'm no expert on restriction enzymes. Can anyone else comment? If you do find the source of the error please let us know. - Mark zhenqing ye <[EMAIL PROTECTED]> Sent by: [EMAIL PROTECTED] 05/10/2005 03:04 PM To: [email protected]

[Biojava-l] topic about RestrictionEnzyme

2005-05-10 Thread zhenqing ye
Hi, i have solved the problem, so let's share it. the code line in RestrictionEnzymeManager.java should be changed to the correct one as following. // Create site value splitter RegexSplitter site = new RegexSplitter(Pattern

Re: [Biojava-l] topic about RestrictionEnzyme

2005-05-10 Thread mark . schreiber
I was going to patch this in CVS but it seems Richard beat me to it! Mark Schreiber Principal Scientist (Bioinformatics) Novartis Institute for Tropical Diseases (NITD) 10 Biopolis Road #05-01 Chromos Singapore 138670 www.nitd.novartis.com phone +65 6722 2973 fax +65 6722 2910 zhenqing ye

[Biojava-l] Ant, Biojava and NetBeans

2005-05-10 Thread mark . schreiber
Hello - I have been playing with biojava and NetBeans 4.0, I have been pleasently surprised to find it works very well. It copes with the idea of having lots of source directories, integrates very well with CVS and does a good job of building from the Ant build.xml The one thing I have had pro