Hi,
I'm still having problems with nested features. I know that the order
in which they are retrieved is not constant, but the hierachy should
be. I do:
delete(db, "AF100928");
create(db, sequence);
retrieveSeq(db, "AF100928");
and get:
deleting AF100928
adding a sequence
1
retrieving AF100928
A
Hello!
I created a Hmm with an Alphabet, that
contains 9 different Proteins such as ALA, ARG, etc.
After i created this model, i want to read in an
aligment from a file and start Viterbi with the aligment as input.
When i do so, i always get the following error:
[code]
org.biojava.bio.symbol.Illega
>From the exception trace it looks as though Viterbi thinks you are using
a DnaAlphabet when in fact you have a custom one. However without seeing
your code it's hard to tell if this is a bug in BioJava, or a problem in
the way Viterbi has been called.
Could you provide a sample method which shows
Just to get this straight, if I follow your code correctly, then the second
example output you should be seeing is the correct one. Could you confirm that
this is what you are expecting? At least then it gives us something to work
towards as a definite known correct answer.
It would also be hel
