Re: [Biojava-l] nested features

2005-05-19 Thread Martina
Thanks for your interest, Richard, I should have made this clearer: yes, I'm expecting the second output: retrieving AF100928 AF100928 contains 1 features Source: ncbi Type: gen contains: 2 Second Level: Source: AIF Type: siRNA contains: 1 Second Level: Source: AIF 5`450 / AIF 3`682 Type: Amplicon

[Biojava-l] BioException Error

2005-05-19 Thread Brian Cox
I am getting a BioException Error thrown on a new MAC but the same code and BioJava version running on a windows box and a older MAC are okay. Is there any known issue with newer MACs? the error is: AlignExtractTF.java:221: cannot access BioException bad class file: ./BioException.java file does

RE: [Biojava-l] BioException Error

2005-05-19 Thread Richard HOLLAND
The machine you run your code on should make no difference at all in this case. The problem is more likely to be with the Java environment on your newer machine, and/or the way in which BioJava was compiled. It does look like you may be running different versions of Java on the two machines. This c