Re: [Biojava-l] Homologene parser update?

2005-06-08 Thread Gary Bader
Hi Mark, Thanks. The changes that NCBI made to their file formats are large, so I could write another builder/parser for the new file format, but it would not map completely to the existing parser (which is now broken because of NCBI format changes to even the deprecated file format). If I

Re: [Biojava-l] Homologene parser update?

2005-06-08 Thread mark . schreiber
Hello - The best way to proove the code is worthy is to provide JUnit tests with the code that provide good coverage of the functionality. If the tests pass the code is worthy. Other more esoteric things like good API design and efficiency are also nice but if the unit tests don't pass it doesn

Re: [Biojava-l] Homologene parser update?

2005-06-08 Thread Gary Bader
Hi, I just wrote a homologene parser that includes unit tests. NCBI split homologene into simple + complex file formats - I only parse the simple format. Should I send you the code? I doubt you would want to integrate it now, since I can imagine a few more useful methods, but, with design