Re: [Biojava-l] Parse a Blast

2005-06-13 Thread Sébastien PETIT
Hello, Mark Thanks for the answer... The parser you talked me about, may be the good one... But I'm maybe not enought good in Java and I can't use it. I spent all the morning trying to understand this class and how it works, but, nothingI didn't understand how I can use it... Thank you for a

[Biojava-l] [BioSQL-l] hierachy of features

2005-06-13 Thread Martina
I get differend results on differend runs. The hierachy of features changes (not only the order) - with the same code. I'm using bioJava Live. I do: delete(db, "AF100928"); create(db, sequence); retrieveSeq(db, "AF100928"); and get: deleting AF100928 adding a sequence 1 retrieving AF100928 AF

[Biojava-l] OT: JTest

2005-06-13 Thread Smithies, Russell
Hi all, Sorry about the off-topic question but has anyone tried JTest from ParaSoft? We're thinking of buying it and all the reviews I've read seem OK but I'd like to hear comments from someone who actually uses it. Thanx, Russell Smithies Bioinformatics Software Developer Invermay Research C