[Biojava-l] Graph library

2005-10-02 Thread mark . schreiber
Hello - Does anyone know of a good java graph library that is LGPL, Apache license or similar? Not data graphing but graph as in the mathematical construct. - Mark Mark Schreiber Principal Scientist (Bioinformatics) Novartis Institute for Tropical Diseases (NITD) 10 Biopolis Road #05-01 Chromo

Re: [Biojava-l] Graph library

2005-10-02 Thread Gary Bader
Hi Mark, My favorite is Cytoscape (www.cytoscape.org), which includes a graph library (full disclosure - I'm involved in the project). It is LGPL. You can also look at JUNG (http://jung.sourceforge.net/). It is BSD. Cytoscape is better suited to biological problems than JUNG and I use it with

Re: [Biojava-l] Graph library

2005-10-02 Thread mark . schreiber
Looks interesting. What is the relationship between cytoscape and GINY? - Mark Gary Bader <[EMAIL PROTECTED]> 10/03/2005 02:23 PM To: Mark Schreiber/GP/[EMAIL PROTECTED] cc: [email protected] Subject:Re: [Biojava-l] Graph library Hi Mark,