[Biojava-l] Announcement: Bioclipse

I would hereby like to announce the development of a new project entitled Bioclipse[1], aimed at creating a Java-based, open source, visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP). Bioclipse will provide functionality for chemo- and bioinformatics to

Re: [Biojava-l] BaumWelchTrainer Broken??!!! (please help)

Thanks for your response. Yes, I did set some initial weights before starting the BW trainer. I copied the snippet that uses SimpleModelTrainer directly from the profileHMM.htm page. I have compiled and run the code from http://www.biojava.org/docs/bj_in_anger/profileHMM.htm and I get the s