Hi Ola!
you might also want to have a look at how the SPICE - browser does the
das communication.
http://www.efamily.org.uk/software/dasclients/spice/
devel_dasrequests.shtml
Cheers,
Andreas
---
Andreas Prlic Wellc
Ola Spjuth wrote:
Hi,
I am investigating the usefulness of BioJava as a backend for sequence
management in Bioclipse (www.bioclipse.net). As a total newbie to
Biojava, I have read the tutorial, BIA examples, glanced at the API,
read my first FASTA-sequence and have come up with a few questions:
Thanks for all the comments, it should get me started.
I do not intend to write a file-format guesser (out of my scope) but I
would like to make an RFE for it here and now. I think many people would
benefit from it.
Cheers,
.../Ola
On Tue, 2005-11-29 at 14:34, Kalle Näslund wrote:
> Ola Spju
Hello,
I'm referring to the BioSQL-Database-Problem, which I described last
week. I had a problem with the exception "error loading ontology terms"
when trying to add a Sequence to the DB. At that time I used Biojava1.4.
As I was advised, I installed the latest CVS-update today and now the
data
Regarding the format guessing function. It was deprecated cause it cannot
be gaurenteed to work. However, deprecation might be a bit extreme,
especially if many people use it. I would propose that we undeprecate it
and just document a warning saying it may not work. Any objections?
- Mark
Hi there,
Seeing as people think it'd be quite useful, I've added some format-guessing
functionality to BioJavaX (although I haven't touched the old one).
Here's how you would use it:
// Load the classes that represent the selection of formats your
program expects to receive
Cl
I've got an ArrayList object containing a PDB file's information.How
may I feed it to the structure parser? As far as I could see, it onlyaccepts
BufferdReader or imputStream...
___
Biojava-l mailing list - [email protected]
http://biojava.org/mai
Combine into a single String separated with newline characters, then see
java.io.StringReader - this provides a Reader, which you can then wrap
in a BufferedReader.
Richard Holland
Bioinformatics Specialist
GIS extension 8199
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