Andreas Tille pushed to branch master at Debian Blends Team / med
Commits: f32f43ec by Andreas Tille at 2020-07-20T10:56:16+02:00 Remove duplicates, fix typos - - - - - 3 changed files: - tasks/bio - tasks/bio-dev - tasks/covid-19 Changes: ===================================== tasks/bio ===================================== @@ -143,7 +143,7 @@ Suggests: q2-cutadapt, q2cli, q2templates -Suggets: q2-taxa, +Suggests: q2-taxa, q2-alignment, q2-emperor, q2-composition, @@ -613,8 +613,6 @@ Remark: There is no intend to keep continue the existing packaging since Recommends: dendroscope -Suggests: dextractor - Recommends: dindel Recommends: drop-seq-tools @@ -1075,8 +1073,6 @@ Recommends: python3-pybedtools Suggests: python3-pybel -Suggests: python3-pychopper - Suggests: python3-pyfaidx Suggests: python3-pyflow @@ -1225,8 +1221,6 @@ Recommends: r-cran-treescape Recommends: r-cran-tsne -Suggests: r-bioc-tximport - Recommends: r-cran-vegan Recommends: r-cran-webgestaltr ===================================== tasks/bio-dev ===================================== @@ -12,8 +12,6 @@ Recommends: mcl X-Category: Analysis of network structure X-Importance: Clustering of graphs -Suggests: python3-anndata - Recommends: biosquid Recommends: cwltool, snakemake @@ -162,7 +160,7 @@ Suggests: r-bioc-affy, Suggests: r-cran-adegenet, r-cran-adephylo -Suggest: r-cran-amap +Suggests: r-cran-amap Suggests: r-cran-biwt @@ -240,7 +238,7 @@ Suggests: r-cran-robustrankaggreg Suggests: r-cran-rocr -Suggets: r-cran-rook +Suggests: r-cran-rook Suggests: r-cran-rsvd @@ -473,7 +471,7 @@ Recommends: python3-bx Recommends: toil, python3-galaxy-lib -Suggets: cthreadpool-dev +Suggests: cthreadpool-dev Recommends: libbio-eutilities-perl @@ -521,13 +519,13 @@ Recommends: libstatgen-dev Recommends: python3-pyani -Recommends: python3-screed - Recommends: python3-treetime Recommends: libbio-tools-run-alignment-tcoffee-perl, libbio-asn1-entrezgene-perl, libbio-chado-schema-perl, libbio-samtools-perl, libbio-scf-perl, libbio-tools-phylo-paml-perl, libbio-tools-run-alignment-clustalw-perl -Recommends: python3-pybel python3-bel-resources +Recommends: python3-pybel + +Suggests: python3-bel-resources Recommends: python3-mirtop ===================================== tasks/covid-19 ===================================== @@ -149,8 +149,6 @@ Recommends: salmon Recommends: rna-star -Recommends: fastqc - Recommends: allelecount Recommends: r-other-ascat @@ -183,8 +181,6 @@ Recommends: filtlong Recommends: mecat2 -Recommends: megahit - Recommends: metabat Recommends: nanolyse @@ -225,8 +221,6 @@ Recommends: bamkit Recommends: libbbhash-dev -Recommends: dextractor - Recommends: flappie Recommends: flash @@ -470,8 +464,6 @@ Recommends: mmseqs2 Recommends: odil -Recommends: orthanc - Recommends: orthanc-dicomweb Recommends: paleomix @@ -520,8 +512,6 @@ Recommends: python3-screed Recommends: python3-tinyalign -Recommends: python3-treetime - Recommends: python3-typed-ast Recommends: q2-cutadapt @@ -540,8 +530,6 @@ Recommends: r-cran-qtl Recommends: r-cran-stringi -Recommends: r-cran-surveillance - Recommends: ragout Recommends: rsem View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/f32f43ecb0b15edfb762121313e08f94f442b9e5 -- View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/f32f43ecb0b15edfb762121313e08f94f442b9e5 You're receiving this email because of your account on salsa.debian.org.
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