On 12 Feb 2004, at 10:18 PM, Sean Quinlan wrote:
Date: 13 February 2004 08:14:59 AM EST
Subject:
ATT3259322.txt
Hi! For some reason, all of your posts have always arrived to me as
attachments -- never in the body of the email. I'm using Apple's Mail
client with OSX 10.3.2.
Do you have any
I'm trying to find a way to compress large text strings (genomes) for
storing in a database. I'd really prefer to avoid using temp files if
possible. Not so much for loading the data, but I'm hoping to use the
same methodology on the occasion I need to decompress and use that data.
I searched
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Sean Quinlan wrote:
| I'm trying to find a way to compress large text strings (genomes) for
| storing in a database. I'd really prefer to avoid using temp files if
| possible. Not so much for loading the data, but I'm hoping to use the
| same
On Thu, 2004-02-12 at 19:37, Chris Devers wrote:
I assume you tried CPAN?
Of course (and um, I mention that in the email).
http://search.cpan.org/search?query=gzipmode=all
First hit is PerlIO::gzip, which looks promising...
Yes, I skimmed over that one. However I'm trying to find a way to
On Thu, 2004-02-12 at 19:24, J. Wren Hunt wrote:
Or you might try Compress::Zlib (file-based).
Compress::Zlib is actually NOT file based. It operates on scalars in
memory.
Oh, and Sean, have a look at bioperl before you get too deep in your
project: http://bioperl.org/
-- Jeremy
On Thu, 2004-02-12 at 19:37, Chris Devers wrote:
I assume you tried CPAN?=20
First hit is PerlIO::gzip, which looks promising...
Yes, I skimmed over that one. However I'm trying to find a way to do it
without using files, which PerlIO::gzip seems to be doing.
Yes, it does use files, but
On Thu, 2004-02-12 at 20:18, Gyepi SAM wrote:
Yes, it does use files, but newish perls support the concept of in-memory
files. So the PerlIO::gzip example becomes:
use PerlIO::gzip;
my $string;
open FOO, :gzip, \$string or die $!;
print FOO 'blah blah blah';
close FOO;
print
SQ == Sean Quinlan [EMAIL PROTECTED] writes:
SQ I searched CPAN but didn't find anything that appeared to provide
SQ that functionality. I've also struggled with opening a pipe to
SQ gzip; it compresses fine but I haven't figured out a way to
SQ capture gzips output, which it forces to
On Thu, Feb 12, 2004 at 08:51:43PM -0500, Sean Quinlan wrote:
On Thu, 2004-02-12 at 20:18, Gyepi SAM wrote:
Thanks Gyepi! Unfortunately, while this did not throw any errors, it
also did not produce any output?
I just installed PerlIO::gzip so I could test the example and it works for me,
so it
On Thu, 2004-02-12 at 19:26, Jeremy Muhlich wrote:
Check out Compress::Zlib .
This works fine, and I've got a first working version completed. Thanks
everyone!
--
Sean Quinlan [EMAIL PROTECTED]
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On Thu, 2004-02-12 at 21:21, Gyepi SAM wrote:
I just installed PerlIO::gzip so I could test the example and it works for me,
so it must be you or your system ;) Was your perl built with perlio?
perl -V|grep io
should produce at this something like this:
useperlio=define
On Thu, 12 Feb 2004, Sean Quinlan wrote:
On Thu, 2004-02-12 at 19:37, Chris Devers wrote:
I assume you tried CPAN?
Of course (and um, I mention that in the email).
Err, so you did.
Note to self: read carefully before impulsive replies... :-/
--
Chris Devers
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