bug#68333: Time bomb in icedtea/openjdk

2024-01-08 Thread Julien Lepiller
Hi Guix! There seems to be a time bomb in icedtea@2 and openjdk@9. while building it: Error: time is more than 10 years from present: 138852720 java.lang.RuntimeException: time is more than 10 years from present: 138852720 at build.tools.generatecurrencydata.GenerateCurrencyData.makeSpeci

bug#39885: Bioconductor URI, fallback and time-machine

2024-01-08 Thread Ricardo Wurmus
Ludovic Courtès writes: >> With all these notes out of the way I’ll prepare a series of patches >> next. > > I don’t think it happened but it’d still be nice. :-) The WIP commit is here: https://git.savannah.gnu.org/cgit/guix.git/commit/?h=wip-r&id=e81a75a7b28c633a658ceeb0a728255674f56c58 -

bug#39885: Bioconductor URI, fallback and time-machine

2024-01-08 Thread Ludovic Courtès
Hi, (Replying to a 1.5-year-old message…) Ricardo Wurmus skribis: > I have finally taken the time to review this and implement a first draft > of a change to the bioconductor importer and updater. > > There are some limitations: > > - we cannot use the updater to go from “url-fetch” to “git-fet

bug#39885: Bioconductor tarballs are not archived

2024-01-08 Thread Ludovic Courtès
Hi! Simon Tournier skribis: >> I was wondering whether we’re now doing better for Bioconductor >> tarballs. The answer, based on small sample, seems to be “not quite”: [...] > but, now the past reads, > > $ for url in > https://bioconductor.org/packages/release/bioc/src/contrib/BiocNeighbors

bug#67329: Plan9port breaks Emacs Dired

2024-01-08 Thread 宋文武 via Bug reports for GNU Guix
Navajeeth writes: > There’s a bug with the ‘plan9port’ (p9p) package on Guix—installing it on the > Guix System breaks Dired inside Emacs. > When I try to open a Dired buffer with p9p installed, I get the following > error: > > (error "Listing directory failed but ‘access-file’ worked") >e

bug#39885: Bioconductor tarballs are not archived

2024-01-08 Thread Simon Tournier
Hi, On Fri, 22 Dec 2023 at 14:40, Ludovic Courtès wrote: >> guix build: error: build of >> `/gnu/store/q9ggmh5a9bzmnr49p10x1w9sv6pzjarv-BiocNeighbors_1.4.1.tar.gz.drv' >> failed First thing first, please note that we are speaking about tag 1.4.1 and not 1.20.0. And this 1.4.1 is gone from “o

bug#64360: error: ghc-onetuple: unbound variable

2024-01-08 Thread Simon Tournier
Hi, On Wed, 20 Dec 2023 at 11:56, Csepp wrote: >>> In guix/packages.scm: >>> 1371:17 17 (supported-package? # …) >>> In guix/memoization.scm: >>> 101:0 16 (_ # # …) >>> In guix/packages.scm: >>> 1349:39 15 (_) >>> 1611:16 14 (package->bag _ _ _ #:graft? _) >>> 1715:47 13 (thunk) >>>

bug#39885: Bioconductor URI, fallback and time-machine

2024-01-08 Thread Simon Tournier
Hi Ludo, On Fri, 22 Dec 2023 at 21:57, Ludovic Courtès wrote: > In hindsight this is not surprising: this is a Dec. 2019 commit and I > set up , > disarchive.guix.gnu.org, and related machinery in Sep/Oct 2021. > > Of course Timothy set up