eventually adding some indexes might also help, see:
http://www.mainelydesign.com/blog/view/speeding-up-cakephp-acl-component
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I assume you have used the build_acl function from the tutorial in the book.
I had the same experience in an application with 50 controllers and about 5
functions average per controller. I think the main problem is, that the ACL
behaviour is building a tree and this tree has to be sortet after e