Re: [ccp4bb] phaser and percent composition result [ part 2]

2007-09-20 Thread Randy J. Read
On Sep 18 2007, Bryan W. Lepore wrote: i wrote (ensemble) / (sequence) to get a percent composition i forgot to emphasize that i do not mean the Vm or the Z composition, but the composition as one would enter e.g. COMPosition ENSEmble mol1 FRACtional 0.22 or COMPosition SCAttering

Re: [ccp4bb] anisotropic scaling in refmac versions

2007-09-20 Thread Eleanor Dodson
I cant answer - but this version certainly generates anisotropic scales.. We have ccp4.6.0.2 installed) ### ###

[ccp4bb] unsubscibe

2007-09-20 Thread Anat Bashan
unsubscibe

Re: [ccp4bb] unsubscibe

2007-09-20 Thread William Scott
Go to the jiscmail page and follow the directions. On Thu, 20 Sep 2007 16:31:07 +0200 Anat Bashan [EMAIL PROTECTED] wrote: unsubscibe

Re: [ccp4bb] post-doc possibility in newcastle

2007-09-20 Thread William Scott
On Thu, 20 Sep 2007 17:23:05 +0100 R. J. Lewis [EMAIL PROTECTED] wrote: a large signalling complex called the 'stressosome' from B. subtilis. - If you decide to go for the human form of this signalling complex, I am an over-producing strain.

Re: [ccp4bb] post-doc possibility in newcastle

2007-09-20 Thread Andreas Forster
You'd need quite a large French press or meat grinder to crack the cells and get the protein. William Scott wrote: On Thu, 20 Sep 2007 17:23:05 +0100 R. J. Lewis [EMAIL PROTECTED] wrote: a large signalling complex called the 'stressosome' from B. subtilis. -

Re: [ccp4bb] How to calculate the contacts between the dimer-dimer interface

2007-09-20 Thread Nikos Pinotsis
Hi, apart from the ccp4 contact it's also worth checking the following servers: pisa: http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html protein-protein interaction server: http://www.biochem.ucl.ac.uk/bsm/PP/server/index.html Cheers Nikos Xiaoyi Deng wrote: Dear all: I used moleman2 to

Re: [ccp4bb] How to calculate the contacts between the dimer-dimer interface

2007-09-20 Thread Soisson, Stephen Michael
If you just want the residues involved in the interface, you can use the byres selection commands in Pymol. select contacts, (byres monA and (monB around 4)) which will show all the residues on monA that are within 4 Ang. of Mon B. Steve -Original Message- From: CCP4 bulletin board

[ccp4bb] Molecular replacement

2007-09-20 Thread sekar
Dear All, I wanted to solve one of my new structures by molecular replacement. I got three short search motifs from three different structures available in the PDB. My question is, how do I use all the search models to solve the structure. With by best regards, Sekar (\_/) (='.'=)