ADP does not have these synonyms. I can add this but it will be short
term solution. We need long term solution with backward
compatibility. I am working on that.
For short term synonyms for ADP (AMP, ATP, NAD, NDP etc) could be added.
Garib
On 8 Oct 2008, at 11:01, Martyn Winn wrote:
I
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As far as I understand it (not very far), the PDB version 3 format
changes the naming of ribose ring atoms in nucleic acid to the
conventional C1', C2' etc from the version 2 C1* etc
The dictionaries supplied with Coot Refmac have the V2 style names
C1* etc
eg a/ADP.cif
data_comp_ADP
I believe Garib handles a lot of these things through the use of
synonyms, see mon_lib_list.html The section data_comp_synonym_atom_list
has things like:
Ad .C1*'C1''
Ad .C2*'C2''
Is that what you wanted? Not sure if it is complete, e.g. not sure if it
I am in the process of changing and checking. I hope it will be
available soon.
Garib
On 8 Oct 2008, at 10:06, Phil Evans wrote:
As far as I understand it (not very far), the PDB version 3 format
changes the naming of ribose ring atoms in nucleic acid to the
conventional C1', C2' etc
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