[ccp4bb] Summary:[ccp4bb] Looking for PDB His-tag statistics

2011-01-12 Thread Snijder, Arjan
Thanks all for information and tips. With the help, I did some quick'n dirty analysis Total PDB (2011-01-11) 70303 Method Xray 61092

Re: [ccp4bb] SAXS collection

2011-01-12 Thread Richard Edward Gillilan
What kind of SAXS data are you looking for? Richard On Jan 11, 2011, at 11:29 PM, Rojan Shrestha wrote: Hello: I am searching for SAXS data depositor like protein data bank for protein structure and EDS from electron density map. I have no idea how can I get SAXS data. Is there a depository

Re: [ccp4bb] Saxs reviews or books

2011-01-12 Thread Richard Edward Gillilan
I will second this particular reference (below). A number of our SAXS users have found it to be one of the most accessible and practical guides for the non-specialist/non-physicist, with lots of emphasis on biological applications. Someone already mentioned the EMBO practical course web link,

[ccp4bb] CALL FOR ABSTRACTS FOR YC SATELLITE AT BCA SPRING MEETING

2011-01-12 Thread Coles S.L.
Dear all, In case you have not heard of us: We are the Young Crystallographers Group (YCG) of the British Crystallographic Association (BCA) and we are in the process of organising our annual meeting. The YC2011 Satellite will take place from the afternoon of 11th April to lunchtime on 12th

[ccp4bb] What is the simplest method to analytically compute the Solvent-Accessible Surface Area of a given atom in a protein?

2011-01-12 Thread Francois Berenger
Hello, Does someone know some good articles on this particular topic? I'd like to implement the thing myself, however if there is a good software doing the job (with readable source code), I might use and cite it. Best regards, Francois.

Re: [ccp4bb] What is the simplest method to analytically compute the Solvent-Accessible Surface Area of a given atom in a protein?

2011-01-12 Thread Pavel Afonine
Bulk-solvent mask calculation (if that's what you want) is available in CCTBX library, and it can be easily used. Let me know if interested and we can discuss it off-list. I can send you some ten-line Python script-example that computes it given a PDB file. Pavel. On Wed, Jan 12, 2011 at 10:00