[ccp4bb] Iphone microscope

2011-11-06 Thread Mark J van Raaij
could this make acceptable pictures of protein crystals? http://www.ubergizmo.com/2011/11/the-extreme-60x-100x-magnifying-microscope-for-your-iphone/ I imagine holding the phone stable might be difficult - and that crystals may be too far away from the lens in some types of crystallisation

Re: [ccp4bb] Merging with CAD files

2011-11-06 Thread Clemens Vonrhein
On Sun, Nov 06, 2011 at 05:35:29AM +, Ramanuj Banerjee wrote: I used CAD for merging datasets during MIR. I faced the same problem. The solution is: the datasets you are trying to merge should have different labels i.e if dataset 1 has labels: F and SigF, dataset 2 should be F_d1 and

Re: [ccp4bb] Iphone microscope

2011-11-06 Thread Bosch, Juergen
Hi Mark, I'd rather hold the iPhone to the lense of your regular microscope instead. Jürgen .. Jürgen Bosch Johns Hopkins Bloomberg School of Public Health Department of Biochemistry Molecular Biology Johns Hopkins Malaria Research Institute 615 North Wolfe Street, W8708

Re: [ccp4bb] yellow crystals

2011-11-06 Thread Artem Evdokimov
When we were working on PheRS we noticed that our protein preps (and crystals) had shades of color: sometimes they were pinkish and sometimes yellowish, or even blueish (and often colorless)! We solved the structure eventually and found a new metal-binding microdomain previously not found in these

Re: [ccp4bb] yellow crystals

2011-11-06 Thread Adrian Goldman
I agree: light yellow (straw-yellow) proteins often indicate metal-binding - it's typically iron III. Zn salts tend to be colourless, and the Mn-pink is too pale to be visible at protein (mM) concentrations. This can be determined by doing flame-spectroscopy, if you don't mind destroying your

Re: [ccp4bb] yellow crystals

2011-11-06 Thread Bosch, Juergen
Cobalt leaching of TALON resin perhaps ? Should be more orange type of color, but it depends on the concentration. In any event if you shoot those crystals run a scan to find out what metal is bound and use it for phasing if you have access to a MAD line. Jürgen On Nov 6, 2011, at 9:56 AM,

Re: [ccp4bb] Xenon Derivatization

2011-11-06 Thread Albert Guskov
Hi Brennan, we did some time ago a kind of similar experiment, where we used Xe and Kr to contour the channels within Photosystem II (see Gabdulkhakov et al, Structure. 2009 Sep 9;17(9):1223-34 for the pressure, wavelength and derivatization time values we used) However before doing this we went

[ccp4bb] how to use refine ligand containing heavry atom

2011-11-06 Thread Zhipu Luo
Dear all I have a protein soaked in a coordination compound containing platinum. Due to some reason, I do not get the anomalous data at 1.072 angstrom, only got a set of data at 0.973 angstrom. I have solved the phase through molecular replacement, and refined the model to Rfactor=0.2204,

[ccp4bb] Crystalization in low PH

2011-11-06 Thread Sam Arnosti
Hi everyone I have a protein that is extraordinarily stable at PH=3.0 or even 2.0. I want to crystallize it in the low PH and compare the differences between the crystals in regular PH and low PH. I was wondering how people set up the boxes in low PH, as usual buffers are mostly less acidic.