Re: [ccp4bb] SCALA bugs in CCP4 6.3.0?

2012-08-04 Thread David Waterman
Dear Peter, You are not alone with this. We have just found out about this bug. It appears to just be a problem with output formatting (the MTZ should be fine). We'll get a fix as soon as we can and will provide a link to 6.2.0's version of scala from the problems page as a workaround early next

Re: [ccp4bb] SCALA bugs in CCP4 6.3.0?

2012-08-04 Thread Phil Evans
This must be a problem on Windows as it doesn't show up on OSX or Linux, and this code hasn't changed for a long time, I think David I guess you will feed this back to me: I don't have any way of testing on Windows Anyway, Aimless should be better :-) Phil On 4 Aug 2012, at 14:26, David

Re: [ccp4bb] Protein-Protein Interactions

2012-08-04 Thread Manish Chandra Pathak
In addition to what Francisco suggested, looking at the sequences with evolutionary highlited residues will provide additional info. If modeled structures are available , which is not the case with this query, investigating the corresponding electrostat potential using APBS might give

[ccp4bb] OFF TOPIC: recommendations for High Pressure Homogenizers

2012-08-04 Thread Marcelo Carlos Sousa
Sorry for the off topic question, but it is relevant to those that produce proteins for crystallographic purposes: We are looking to replace an old French Press with a high pressure homogenizer for cell disruption (E. coli and yeast). We are currently looking at the Avestin C3 and the Niro

Re: [ccp4bb] OFF TOPIC: recommendations for High Pressure Homogenizers

2012-08-04 Thread Bosch, Juergen
[flame me if you can] ADVERTISEMENT I have been a happy customer since 2000 with a Avestin Emulsiflex C5 in Martinsried, a short dark period using french press (they are good for coffee, granted a different type of french press) and back to an Avestin C5. The advantage versus other systems is

Re: [ccp4bb] MR with Phaser

2012-08-04 Thread Uma Ratu
Thank you very much for your comments. I re-do the data process with P21, and use the output for Phaser. This time, Phaser finishes with good resolution, the TFZ is 28. And the model is tetramer. Cheers Uma On Thu, Aug 2, 2012 at 9:45 PM, Roger Rowlett rrowl...@colgate.edu wrote: A few

[ccp4bb] CCP4-6.3.0 installation

2012-08-04 Thread james09 pruza
Dear CCP4bbers, I am facing CCP4-6.3.0 installation problem. Unable to run make. Configuration is done. Getting error while running make (command not found). Please help. Thanks in advance, James

Re: [ccp4bb] CCP4-6.3.0 installation

2012-08-04 Thread David Schuller
On 08/04/2012 04:38 PM, james09 pruza wrote: Dear CCP4bbers, I am facing CCP4-6.3.0 installation problem. Unable to run make. Configuration is done. Getting error while running make (command not found). Please help. Thanks in advance, James Which operating system are you using? On

Re: [ccp4bb] CCP4-6.3.0 installation

2012-08-04 Thread David Waterman
Please note that we do now offer both 32 and 64 bit binary bundles of the CCP4 suite on Linux. With the new Package Manager, binary installation is supposed to be 'painless'. So you may like to try this, rather than feeling to ought to compile your own. Your feedback is welcome. Cheers David. On

Re: [ccp4bb] SCALA bugs in CCP4 6.3.0?

2012-08-04 Thread David Waterman
Yep, it's definitely our problem not yours, Phil ;-). I believe the only change to scala source since 6.2.0 was to up the maximum number of batches again. This new bug is probably related to the change of compiler for 6.3.0. We'll be trying to make sense out of this next week. Cheers D On Aug 4,