Hello Everone,
Thanks for all the help. The key to finding the problem was following up on
Tim Gruene's suggestion to compare the data sets directly. It appears that an
error occurred during conversion from I to F - until I find the log file for
the conversion, I can't guess what was done.
L
Thank you, guys. My problem has been solved. AutoMR in CCP4 removed the
insertion code. But I used it before, and it did not mess up with the
insertion code at those times.
Rain
On Thu, Jun 27, 2013 at 12:56 PM, Ian Tickle wrote:
> Last time I checked pdbset doesn't renumber the LINK, CISPE
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Post Summary Applications for the post of Postdoctoral Research Fellow in the
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On 06/27/2013 05:34 PM, Ben Eisenbraun wrote:
Howdy Y'all,
Howdy.
It looks like REFMAC is trying to open
$CLIBD_MON/list/mon_lib_list.cif read-write and then read-only,
Yes, it does... curious. In libcheck.f's WRT_LIB_LIST_NEW_STYLE, should
be OPENFR(), I imagine.
but
with the flag t
Last time I checked pdbset doesn't renumber the LINK, CISPEP, SSBOND
records at the same time (but maybe it was fixed).
-- Ian
On 26 June 2013 07:41, Francois Berenger wrote:
> I think pdbset from CCP4 can renumber a PDB and hence get rid of the uggly
> insertion codes.
>
>
> On 06/26/2013 03:
Howdy Y'all,
I have a lab where REFMAC jobs are blowing up trying to access the
monomers database. The logfile looks like this:
Open failed: Unit: 7, File:
/programs/x86_64-linux/ccp4/6.3.0/ccp4-6.3.0/lib/data/monomers/list/mon_lib_list.cif
(logical:
/programs/x86_64-linux/ccp4/6.3.0/ccp4-6.3.
On 22 June 2013 19:39, Douglas Theobald wrote:
>
> So I'm no detector expert by any means, but I have been assured by those
> who are that there are non-Poissonian sources of noise --- I believe mostly
> in the readout, when photon counts get amplified. Of course this will
> depend on the exact
I disagree with Herman that 3 sigma features are "nothing to worry
about". Indeed, I think this is one of the deepest and most disturbing
problems with macromolecular crystallography in general. Why can't we
explain our data to within experimental error?
If you think all the green and red
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Hi Joe,
What is known as 'green paper' and some of the 'burn paper' variants used to be
'Green Detex' from Sessions of York -- and this is to the best of my knowledge
not produced anymore. Green Detex was paper with UV sensitive coating for
calibrating UV lamps. It works to use other UV sensiti
PDBe Quips: transformer proteins - the science, not the fiction.
The bacterial transcription factor RfaH has been shown to undergo
extreme conformational transformation. It is able to switch between two
completely different secondary and tertiary structures, each with a
specific physiological
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Dear Kevin,
the phaser developers would probably give you a precise answer. In the
meantime I would debug this by setting each of the three occurances of
TX to UX (or anything else), one after the other, to check which of
them is misinterpreted.
It's
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