[ccp4bb] Align linux version

2013-11-10 Thread Mintu Chandra
Dear CCP4 users, We are trying to align two different structures. It would be helpful for us if anybody has linux compiled align version? Regards, Mintu Chandra

Re: [ccp4bb] Align linux version

2013-11-10 Thread Tim Gruene
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Dear Mintu Chandra, Do you mean by 'has linux compiled align version', that 'align' is a program you use for the alignment? I wonder because I have not heard of it. If you would be happy with any alignment software, you could use coot (graphical) or

[ccp4bb] postdoctoral position at Brown University

2013-11-10 Thread Alexandra Deaconescu
Dear colleagues, Please see below an announcement regarding an opening for a postdoctoral associate in structural biology at Brown University. Brown University, an Ivy League institution, is located in Providence, Rhode Island, less than one hour away from Boston and three hours away from New York

Re: [ccp4bb] Align linux version

2013-11-10 Thread Jacqueline Vitali
Mintu Chandra, align is gerson cohen's program. Unless you talk about another align. I googled "align for linux Gerson Cohen" and here is what I found -- the linux version http://software.compbio.washington.edu/ramp/ramp/src/other_source/align.save.f Test it and see if it works. If not, there

[ccp4bb] help on preparing EM map for mask generation and molecular replacement

2013-11-10 Thread Fei Li
Dear experts, I'm planning to use a EM map to generate a mask for density modification and also potentially use it in molecular replacement. But I'm stuck on how to make this EM map to behave now. The original EM map was a reconstruction from 2D helical tube. The file was huge (containing

Re: [ccp4bb] monovalent cation binding sites

2013-11-10 Thread Alastair Fyfe
Dear John, many thanks for the reference. Discussions of spatial autocorrelation measures seem to come up mostly in the econometrics and geography literature. An expert (I am not ) will no doubt supply better citations, but the chapters by Haining and Getis in "Handbook of Applied Spatial Anal