Dear Arp/wArp developers,
there seems to be a bug in the latest version of Arp/wArp Solvent (7.4 patch
1) shipped with ccp4 v 6.4.0: despite ticking the box For REFMAC 5 refinement
do USE the Free R flag, the log file shows the message FreeR will not be
used (and it clearly doesn't).
Or am I
Dear Uli,
thanks for letting us know - this is a bug that just happens in the CCP4i
interface.
If you use the command line, everything works fine. Here is an example how to
use arp-solvent on the command line:
# auto_solvent.sh datafile xxx.mtz protein xxx_start.pdb freelabin FREE
We also
Dear Tim,
excellent. Thank you for the quick fix.
Cheers,
Uli
From: Tim Wiegels [maxful...@gmail.com]
Sent: 31 January 2014 12:24
To: Gohlke, Ulrich
Cc: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] bug in Arp/wArp solvent?
Dear Uli,
thanks for letting us know
We are offering RapiData 2014, the sixteenth offering of our popular course:
Rapid Data Collection and Structure Solving at the NSLS: A Practical
Course in Macromolecular X-Ray Diffraction Measurement
The course will be held 27 April - 2 May 2014:
Hi ccp4bb,
I would like to perform an MS analysis of the protein crystals after
X-ray exposure. I'm interested in the characterization of the
modifications on the cofactor (expected mass cca 400Da). I will need to
wash the crystals before MS because they contain glycerol, long chain
PEG and
Dear all
Dear Dr. PDB,
Some time back i had submitted a coordinate in PDB but because of
unacceptance of the manuscript we had to retract the submission. During
this procedure i got few zipped file from the annotator such as 1.
rcsb0.cif-public.gz, 2. rcsb0.pdb.gz and 3.
My earlier mail had an aberration where i began my mail by Dear Dr PDB..i
am extremely sorry for this ..
--
Regards
Faisal
School of Life Sciences
JNU
I would write back to the annotator who send the processed files
to you and ask if you can restart the deposition. The worst they
can say is no and you're back to ADIT. On the other hand they
will probably be as happy as you to save the work that has already
been done.
Dale Tronrud
On
Dear users,
I know one server for having the secondary structure over MSA i.e. Espript.
But I want to incorporate the staring amino acid for protein. I could not
find this option in the tutorial. Is it the post editing is the only way to
add the amino acid numbers or there are other server which
