Dear all：
I got a probem in JLigand. As I run it, a dialog box shows up which says: "
cannot run refmac." However, I can run refmac5 as usual. So what's wrong with
my CCP4?
How can I fix it? plus,my system operation is windows 8.
best regards,
Peter Chen
MolProbity works on chains present in the pdb file.
Therefore, I would predict that if the pdb file can be made to consist
of several chains (built by symmetry operations) and bearing each a
distinct chain name, then MolProbity would (artificially) work on
symmetry-related molecules as well.
Senior Scientist I, Structural Biology - Crystallization-14051J
AbbVie (NYSE:ABBV) is a global, research-based biopharmaceutical company formed
in 2013 following separation from Abbott Laboratories. The company's mission is
to use its expertise, dedicated people and unique approach to innovat
>I would call everything else 'tabloid science'.
...which might be suitable for some journals?
JPK
Cheers,
Tim
On 10/24/2014 04:11 PM, Michal Jamroz wrote:
> Dnia 2014-10-22, o godz. 15:43:18
> Tommi Kajander napisał(a):
>
>> Would anyone know a software to model (just with some kind of r
Dear Pam,
the Coot bug has long been worked out - Coot is now at release version 0.8.
Best,
Tim
On 10/24/2014 04:02 PM, Pamela J Focia wrote:
>
> Until the Coot bug is worked out, why not simply change the water molecule
> you want to be an ion into the atom you want it to be in the pdb file w
Hi Tommi,
I used Molscript to place a dotted line in the gap. This shows clearly
from where to where the gap goes and that the data don't show
interpretable density in that region.
I would call everything else 'tabloid science'.
Cheers,
Tim
On 10/24/2014 04:11 PM, Michal Jamroz wrote:
> Dnia 20
Hi Tommi,
Rosetta can do this but it probably isn't as simple as some other
solutions already mentioned.
https://www.rosettacommons.org/software
Cheers,
Jonathan
On 22/10/14 13:43, Tommi Kajander wrote:
Hi All,
Would anyone know a software to model (just with some kind of random coil) the
Try I-TASSER and MODELER.
Sent from Jack's iPhone
> On Oct 24, 2014, at 9:17 AM, Michal Jamroz wrote:
>
> Dnia 2014-10-22, o godz. 15:43:18
> Tommi Kajander napisał(a):
>
>> Would anyone know a software to model (just with some kind of random
>> coil) the amino acid chain for the assumed flex
Adding metal ions will work properly through the "Get Monomer" dialog in
0.7.2. Until Coot is updated (either manually or through a new CCP4
release) this is a reasonable workaround.
___
Roger S. Rowlett
Gordon & Dorothy Kline Professor
Department of Chemistry
Dnia 2014-10-22, o godz. 15:43:18
Tommi Kajander napisał(a):
> Would anyone know a software to model (just with some kind of random
> coil) the amino acid chain for the assumed flexible disorderd regions
> between domains, or at one end of protein? just for illustrative
> purposes.
Hi Tommi,
ch
Until the Coot bug is worked out, why not simply change the water molecule you
want to be an ion into the atom you want it to be in the pdb file with a text
editor?
-=pam
On Oct 24, 2014, at 5:09 AM, Tim Gruene
mailto:t...@shelx.uni-ac.gwdg.de>> wrote:
Dear Jeorge,
from the second last thr
Dear Jeorge,
from the second last thread, I guess you are using Coot 0.7.2?
Apparently this is a bug that you get around by updating Coot.
Regards,
Tim
On 10/24/2014 10:13 AM, jeorgemarley thomas wrote:
> Hi All,
>
> First of all sorry to ask such simple question over here. I have added
> water
Hi All,
First of all sorry to ask such simple question over here. I have added
water molecule in my protein molecule in coot, also some Ba atom. I have
added the water molecule manually as when it was added automatically the
water added everywhere it find lobes of electron density. And also when I
Hi Jie,
the most obvious thing to do (and you might have tried that already) is to
adjust the voxel size (in Å) and/or the contouring level of the map within
Chimera. Both are normally associated with the EMDB entry of the map (under
"map information”). Try to adjust these values in Chimera usi
Dear Amr,
I am using Coot 0.7.1 and here the problem is that the atom placed at pointer
is by default added to a new molecule. So if you don’t change “new molecule” to
your current molecule in the place atom window, the added atom will be lost and
the water will remain.
Concerning the red patc
15 matches
Mail list logo
