[ccp4bb] Berkeley Server Downtime

2015-06-08 Thread Paul Adams
Dear Colleagues, the CCI group in Berkeley is moving to a new building this week. As a result several structural biology web services will be offline for a short while. These include: - The Phenix web site (http://phenix-online.org/) - The DIALS West web site (http://dials.lbl.gov/) - The

[ccp4bb] PDBe workshop on programmatic access to macromolecular structure information, 24-25 September 2015

2015-06-08 Thread Sameer Velankar
Programmatic Access to Macromolecular Structure Information PDBe Workshop for Programmers, 24-25 September 2015 Deadline for application: Friday 26 June 2015 What? The Protein Data Bank in Europe (PDBe;www.ebi.ac.uk/pdbe/ http://www.ebi.ac.uk/pdbe/) is organising a hands-on,

Re: [ccp4bb] Refmac fatal error with newly added ligand

2015-06-08 Thread Robbie Joosten
Hi Sze Yi, There is already a compound named LIG in the Refmac dictionary. So either you have to choose a new name or you overrule the dictionary by supplying a restraint file in your Refmac run. Cheers, Robbie -Original Message- From: CCP4 bulletin board

[ccp4bb] Refmac fatal error with newly added ligand

2015-06-08 Thread Lau Sze Yi (SIgN)
Hello, I generated my new ligand using smiles string in Phenix with elbow to generate my ligand cif and pdb file. I then open these in Coot along with my protein model and mtz and fitted this new ligand into my density. However Refmac failed with the following details in my log file:

[ccp4bb] ITC workshop [Off-topic]

2015-06-08 Thread Chad Brautigam
Dear All, In the spirit of complementary methods (e.g. see Acta Cryst.D Vol 71), I would like to bring to your attention an upcoming bootcamp on“Isothermal Titration Calorimetry Analysis”, to be held 10-11 September, 2015at the NIH in Bethesda, MD, USA.   Topics will include basic