[ccp4bb] 1st CCP4/BGU Crystallography Workshop

2017-11-16 Thread Anat Shahar
Dear all, We are very pleased to announce the 1st CCP4/BGU Crystallography Workshop, which will take place at Ben-Gurion University of the Negev (BGU) in Beer-Sheba, Israel between 18-23 February, 2018. The workshop is limited to 25 participants, and everybody who is interested is welcome

[ccp4bb] PDRA position at University of St Andrews

2017-11-16 Thread Tracey Gloster
The group of Rafael da Silva at the University of St Andrews has a position open for a 2 year PDRA, funded by the Wellcome Trust, in the area of enzymology and structural biology. Please see https://www.vacancies.st-andrews.ac.uk/Vacancies/W/4793/0/162476/889/research-fellow-in-biology-ar2000ml

Re: [ccp4bb] Scripting for COOT

2017-11-16 Thread Paul Emsley
On 16/11/2017 13:28, Edward A. Berry wrote: (set-go-to-atom-molecule 0) (set-go-to-atom-chain-residue-atom-name "B" 42 " CA ") Would those be also on the command line, or where? You can use them on the command line like this: coot --pdb input.pdb -c '(set-go-to-atom-molecule 0)(set-go-to-ato

Re: [ccp4bb] Scripting for COOT

2017-11-16 Thread Edward A. Berry
(set-go-to-atom-molecule 0) (set-go-to-atom-chain-residue-atom-name "B" 42 " CA ") Would those be also on the command line, or where? On 11/16/2017 07:19 AM, Paul Emsley wrote: On 16/11/2017 08:08, Martín Martínez Ripoll wrote: I am trying to write a long script that, among others, runs COOT

[ccp4bb] AW: [ccp4bb] Scripting for COOT

2017-11-16 Thread Herman . Schreuder
Dear Martin, I use a script which invokes the coot command similar to what you describe with --script mapcent added on the same line. The mapcent script is attached. You can either go to a certain atom, or set hte rotation center in Å coordinates. You can add whatever commands to the script to

Re: [ccp4bb] Scripting for COOT

2017-11-16 Thread Paul Emsley
On 16/11/2017 08:08, Martín Martínez Ripoll wrote: I am trying to write a long script that, among others, runs COOT, and for this purpose we use something like: coot  --pdb  refmac-out.pdb    --auto refmac-out.mtz However, I do not know how to include in the script an instruction or keyword t

[ccp4bb] Scripting for COOT

2017-11-16 Thread Martín Martínez Ripoll
Dear all, I am trying to write a long script that, among others, runs COOT, and for this purpose we use something like: coot --pdb refmac-out.pdb--auto refmac-out.mtz However, I do not know how to include in the script an instruction or keyword to centre at a particular residue numbe

[ccp4bb] search for the program RPScore

2017-11-16 Thread Julian Pfahler
Dear community, sorry, for the slight off-topic question. I am studying the complex of two human proteins. Till now, all co-crystallization trials (some dozen plates) were negative, but cross-linking and MST studies suggested a stable, mid-affinity complex. Therefore, I wanted to dock the pro