Re: [ccp4bb] Refmac5 crashes with coordinates last refined in 2009

2018-11-28 Thread Derek Logan
Hi Jon & Robbie, Yes, that did the trick. I must have missed the whole discussion on how treatment of carbohydrates has changed since I refined this glycosylated protein. Strangely, Refmac still complains that OXT is missing from every residue in the structure, but at least it doesn't bomb out

Re: [ccp4bb] Refmac5 crashes with coordinates last refined in 2009

2018-11-28 Thread Robbie Joosten
Hi Derek, Try removing any MODRES records in your PDB file. This might solve the carbohydrate related issues. Cheers, Robbie On 28 Nov 2018 17:24, Derek Logan wrote: Hi, I'm trying to finish off refinement of a structure I last refined in 2009, but Refmac5 is crashing with very odd

[ccp4bb] Refmac5 crashes with coordinates last refined in 2009

2018-11-28 Thread Derek Logan
Hi, I'm trying to finish off refinement of a structure I last refined in 2009, but Refmac5 is crashing with very odd problems. I list some relevant lines from the log files below. Essentially refmac seems to think that every residue is a terminal one, as it complains that OXT is missing for

[ccp4bb] POST_DOCTORATE POSITION

2018-11-28 Thread Anamika Singh
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