[ccp4bb] AW: [EXTERNAL] [ccp4bb] refmac same residue different names

2019-02-07 Thread Herman . Schreuder
Ed, I did understand your question correctly and (at least for ligands) the procedure I and also Diana Tomchick described, worked. However, I just did a test with both Refmac and Buster and it seems that these programs have now so far been perfected that “errors” like this cannot occur anymore.

[ccp4bb] Call open for beamtime at DESY beamline P11, PETRA III, Deadline: 1 March 2019

2019-02-07 Thread Anja Burkhardt
Dear all, Hereby I would like to invite the submission of regular proposals for DESY beamline P11 at the PETRA III synchrotron in Hamburg. The call is open until Friday March 1, 2019 (inclusive; UTC+1) and is for experiments to be performed in the second half of 2019 (5.7.19 – 20.12.19). Plea

[ccp4bb] Clear Linux

2019-02-07 Thread Karthik Paithankar
Dear Program devs and enthusiasts, After seeing James' email (on dismal CPU performance), I was searching for various ideas and found the so-called "Clear Linux Project". Seems " function multi-version patch" leads to significant improvements. Though I could install the precompiled binary of CCP4

Re: [ccp4bb] Clear Linux

2019-02-07 Thread David Schuller
I would be wary of an OS developed and promoted by a hardware manufacturer (Intel). The Phoronix benchmarks you linked were conducted on an Intel Xeon chip. I wonder how Clear OS performs with AMD chips, which are featuring very attractive performance and price recently. On 2/7/19 10:38 AM,

[ccp4bb] Position opening at RCSB PDB/Rutgers University- BIOCHEMICAL INFORMATION & ANNOTATION SPECIALIST

2019-02-07 Thread Jasmine Young
The RCSB Protein Data Bank (RCSB PDB, rcsb.org ) is a publicly accessible information portal for researchers and students interested in structural biology. At its center is the PDB Core Archive – the single global repository for the 3-dimensional structure data of biological

Re: [ccp4bb] Clear Linux

2019-02-07 Thread Jim Fairman
David, Luckily, phoronix has also benchmarked 10 different linux OSes on a Ryzen 7 1800X and a Threadripper 1950X chip: https://www.phoronix.com/scan.php?page=article&item=ryzen-linux-10way&num=3 -- Jim Fairman C: 1-240-479-6

[ccp4bb] Wanted: Research Computing Engineer in Structural Biology (+ other fields) in New York City

2019-02-07 Thread Daniel Keedy
Hello computational crystallography folks, My institution, the new CUNY Advanced Science Research Center ( asrc.cuny.edu ) in New York City, is looking for a Research Computing Engineer. This is a nice opportunity for someone with broad interests in computational research

[ccp4bb] Transcription start site

2019-02-07 Thread syed ibrahim
Hi All I am trying to code gene prediction. I am looking for the consensus pattern for transcription start site, pribnov bow, ribosomal binding site and so on. I am looking some pattern which are variable and I could not make any conclusion. If anyone can provide all consensus pattern for eukar