Re: [ccp4bb] Coot "Fix nomenclature error" window

2020-05-13 Thread Bernhard Lechtenberg
Dear Evgenii, The following from the Coot manual should help: https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/web/docs/coot.html#set_002dnomenclature_002derrors_002don_002dread add “set-nomenclature-errors-on-read ignore” to your Coot startup file. In case you are using they python file,

[ccp4bb] Deprecation of RCSB PDB legacy APIs

2020-05-13 Thread Jose Duarte
The RCSB PDB legacy APIs are going to be discontinued in November 2020, see the news article from last week: https://www.rcsb.org/news?year=2020=5eb18ccfd62245129947212a=true Programmatic users are strongly encouraged to migrate to the new APIs before November 2020. New json-based APIs are now

[ccp4bb] Coot "Fix nomenclature error" window

2020-05-13 Thread Eugene Osipov
Dear CCP4bb members, how could I disable checks for nomenclature errors and get rid of "Fix Nomenclature Errors" window at every Coot startup? [image: image.png] Thanks in advance, -- Evgenii Osipov Laboratory for Biocrystallography, Department of Pharmaceutical Sciences, KU Leuven O

[ccp4bb] coot scripting advise for beginners

2020-05-13 Thread Schulz, Eike-Christian
Good evening, I am looking for some advice wrt. coot scripting. Unfortunately, I have never done it, and I have to admit I did not find the ccp4-wiki particularly helpful to get started - but that is certainly linked to my generally very limited scripting experience. What I have in mind seems