Hi
I am wondering if there is a simple program that would convert a pdb file into
a matrix that
shows the smallest distance between all pairs of amino-acid side chains?
Thanks,
Misha
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Dear Misha,
There is a program in ccp4 called contacts that will give you this information.
You can alter entry parameters to show you the relevant information.
I think you can also try PISA server from EMBL-EBI.
I reckon both these programs show you all distances and you may have to
manually pi
Yes - contacts or distang gives you a list of distances. PISA a list of h
bonds and salt bridges - all with associated sym ops.
But none produce a complete table - PISA output prob the best.
Eleanor
distang gives you this sort of information but i guess it is far too
detailed?
R 125 NA R
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Hi Deepak
In my opinion, rMMS microseeding, ie adding crushed seed crystals into *random
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crystals per drop.
In a case like this, I would use it straight aw
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