Re: [ccp4bb] How to cut fragment of map

Hi, this can be a start: http://cci.lbl.gov/docs/cctbx/doc_maps_boxing/ There are a lot of boxing options: with and without masking (with many masking options: smooth masks, etc), around atom selection, per NCS etc.. Pavel On Fri, Aug 5, 2022 at 2:30 AM Evgenii Osipov wrote: > Dear CCP4 communit

[ccp4bb] Escet or similar

Dear all I was wondering if there is an alternative to escet, which I found very useful in the past, for comparing crystal structures and evaluating the significance of the shifts. Thanks in advance Best Felipe Trajtenberg, PhD Tenured Research Scientist Laboratory of Molecular & Structural M

[ccp4bb] Tenure-Track Faculty Positions in Structural Biology at Rutgers – New Jersey Medical School

Dear Colleagues: I am delighted to announce that Rutgers - New Jersey Medical School is recruiting for tenure track faculty positions (at the Assistant Professor, Associate Professor, and Professor levels) in the area of structural biology as part of a multi-position search. We are particularly

[ccp4bb] Postdoctoral position at ICTER in Warsaw, Poland – Final warning

Dear all This is a final reminder for this post. The closing date is the 11th of August. A second postdoctoral position in the Integrated Structural Biology lab at The International Center for Translational Eye Research (ICTER) in Warsaw, Poland, is available for highly motivated biologists, bi

[ccp4bb] CryoEM applications development scientist position at SPT Labtech (UK/Europe based)

We have an opening for cryoEM applications development scientist at SPT Labtech. This position is UK/Europe based. Applications will be assessed on a rolling basis until the position is filled. Please get in touch if you have any questions. You can follow the link below for more information and

Re: [ccp4bb] How to cut fragment of map

Dear CCP4, Thanks for the answers — now I could to do map masking using Gemmi. It is worth to post the Python script in case someone else would need it too: import gemmi mtz = gemmi.read_mtz_file(‘map.mtz’) m = gemmi.Ccp4Map() m.grid = mtz.transform_f_phi_to_map(‘2FOFCWT’,’PH2FOFCWT’,sample_ra

[ccp4bb] How to cut fragment of map

Dear CCP4 community, I am looking for a way to cut a fragment of electron density around specified set of atoms using Python script. In CCP4 I found MAPMASK, which could cut fragment of electron density within specified region around input PDB: #!/bin/bash -f $CCP4/bin/mapmask \ MAPIN tmp.map \

[ccp4bb] Postdoctoral position at the VIB-VUB Center for Structural Biology

Dear colleagues, At the VIB-VUB Center for Structural Biology (Vrije Universiteit Brussel / VIB - Brussels - Belgium), we are looking for a highly qualified and motivated postdoctoral researcher with a strong background in Cryo-EM and/or X-ray crystallography, biochemistry and biophysics, and in