[ccp4bb] "PDB in" in Refmac5

2009-09-07 Thread AntonioLeung
hi all, I have a question, what is the input PDB file in Refmac? Is it edited from model building from initial map generated by Phaser(in MR)? What can I do if the initial map is hard to build in? Thanks! Antonio

Re: [ccp4bb] packing diagrammes

2009-08-26 Thread AntonioLeung
Hi, Pymol may do this work, use"Action-->generate-->symmetry mates" -- Original -- From: "Anita Lewit-Bentley"; Date: Wed, Aug 26, 2009 05:48 PM To: "CCP4BB"; Subject: [ccp4bb] packing diagrammes Dear all, does anyone know of a progra

[ccp4bb] How to determine water number?

2009-08-17 Thread AntonioLeung
Hi all, I am a novice working on protein structure. When I pick water using COOT, too many waters picked, filling in the whole cell. My question is how can I determine which water is needed, which is not needed?

Re: [ccp4bb] How to model apo protein structure from solved ligand bound high resolution structure?

2009-08-09 Thread AntonioLeung
Hi, May be you can use "modeller" to model the apo structure using the structure of complex as template. May you success! -- Original -- From: "wu donghui"; Date: 2009年8月9日(星期天) 晚上8:37 To: "CCP4BB"; Subject: [ccp4bb] How to model apo protein struc