Hello one and all !! I have been working on cloning and purification aspects on a Leishmanial cysteine peptidase (pI= 8.2) for quite some time. I had cloned it in pGEX expression vector. Expression seemed quite okay when induced with 0.5 and 1mM IPTG, so did the solubility in 4 buffers at different pH conditions. i. e. Tris (6.8), HEPES (7.5), Bicine (pH = 9) and Glycine (pH=10). The problem is when I purify it using glutathione sepharose column I get only GST (size wise estimation; no western tried ) i.e. a prominent 25 KD band. At the same time I get the fusion protein in the load, equilibration and wash fractions. When I increased Nacl concentration upto 400 mM I only could exclude the fusion protein band from wash. I had tried protease inhibitors like PMSF, sigma cocktail, and DTT in the lysate before sonication. I had also tried reduced glutathione upto 40 mM in the elution buffer with two different pH at 8 and 9.
I also read from literature that similar intracellular cysteine proteases behave same even after mutating the conserved cysteine residue at its active site. They all say that its not because of autocatalytic property of the enzyme its because of some proteases from E.coli. Should I try ion exchange or affinity chromatography using any inhibitor of this enzyme?? Can anyone suggest me some tip?? Guys help me out. i am kind of struck here Ashok Ranjan Nayak Research Scholar Molecular and Structural Biology Division Central Drug Research Institute, Lucknow