Re: [ccp4bb] CCP4I2: non standard ssh port for remote jobs

2020-06-08 Thread Christian Becke
Dear Michael, I've been playing around a bit with remote job submission via SSH in CCP4 7.0. I remember I had to patch some files and upgraded a python lib to add support for ED25519 keys and to allow passing non-standard ports through the GUI. I never got around to wrap this up and forward it

Re: [ccp4bb] Coot 0.9.2 in CCP4 - quad-buffered stereo broken?

2020-11-25 Thread Christian Becke
Dear Paul, Am 25.11.20 um 12:05 schrieb Paul Emsley: On 23/11/2020 15:21, Pedro Matias wrote: In the latest coot update (to 0.9.2) in CCP4 the quad-buffered stereo doesn't seem to work. The NVIDIA emitter turns on but the stereo picture does not appear when the glasses are turned on. Strange

Re: [ccp4bb] Coot 0.9.2 in CCP4 - quad-buffered stereo broken?

2020-11-25 Thread Christian Becke
Hi Paul, Am 25.11.20 um 17:14 schrieb Paul Emsley: I have committed 30ec64cc9906a5f19142a87d88b522f6f65409fa which I think/hope should fix the problem (undoing the breaking). Just to be clear, this commit doesn't require that you have backed out 5043f6adbbbc5725149e6c53bbbc6a85f3c5e8af. 30e

Re: [ccp4bb] Fedora 29 breaks CCP4

2018-11-02 Thread Christian Becke
Sorry, my previous message was sent prematurely... As a workaround, I deleted $CCP4/lib/libfreetype* and $CCP4/lib/libz*. This will force CCP4 to pick up the system versions of these libraries and made it work on my machines (running Gentoo linux with fontconfig-2.13.0, freetype-2.9.1 and zlib-1.2

[ccp4bb] "pandda.analyse ground_state_datasets=" fails with "Error: No shell partitions generated"

2023-09-15 Thread Christian Becke
Hi, I need help with running PanDDA with known ground-state datasets. I installed PanDDA from bitbucket (commit 7453165ba755db3fe0da4a691cebe236fa6e7c34) to use it with CCP4-8.0. I have 34 ground-state datasets and 173 potentially ligand-bound datasets I would like to analyse. I followed the

Re: [ccp4bb] Problems updating CCP4 via CCP4i

2024-01-30 Thread Christian Becke
Dear Pedro, you can start the graphical update manager from command line with ccp4um you can also run updates without the GUI using ccp4um -auto Hope this helps, Christian Am 30.01.24 um 12:40 schrieb Pedro Matias: Dear All, I am no longer able to update CCP4 via CCP4i When I click on "

Re: [ccp4bb] "pandda.analyse ground_state_datasets=" fails with "Error: No shell partitions generated"

2024-04-12 Thread Christian Becke
Hi Filippo, try reducing the number of min_build_datasets: pandda.analyse min_build_datasets=20 ... The default value is 30 (you can see this by running pandda.analyse --show-defaults). HTH, Christian Am 12.04.24 um 10:00 schrieb Filippo Vascon: Hi, I am experiencing the same issue runni