[ccp4bb] phenix.table_one issues

2024-07-17 Thread Dale C
Hi all, I am currently trying to generate a Table 1 in Phenix. I currently have inputted into phenix.table_one, the outputted from model and reflection file from phenix.refine as well as my .cif restraints file for the bound small molecule ligand. Source for Rfactors and resolution/bins are

Re: [ccp4bb] Issue with Phenix/Coot/PyMol after installing ccp4 v8

2022-07-28 Thread Dale C
Hi Paul, I seemed to have fixed the amino acid dictionary issue by following Nick's suggestion to direct Phenix to the new coot.app location in my ccp4 applications folder. Though I am still having the issue that Phenix is not connecting to Coot, is this a known/common issue? Would you please

Re: [ccp4bb] Issue with Phenix/Coot/PyMol after installing ccp4 v8

2022-07-28 Thread Dale C
Hi Nick, Thanks a lot for that advice, directing Phenix to the new coot.app location appears to have fixed the amino acids restraints issue! Though still having issue with Phenix not connecting to Coot, perhaps i will post this issue on the Phenixbb and see what the community has to say.

[ccp4bb] Issue with Phenix/Coot/PyMol after installing ccp4 v8

2022-07-26 Thread Dale C
Hi all, I recently updated my ccp4 package to Program suite v8.0.002 and i have now run into a few issues with other programs. The issues are highlighted below... - When i click 'Open in Coot' on any output through Phenix (so far only tested phenix.refine and phenix.phaser), i no longer see