[ccp4bb] US Distributed Computing Summer School (fully funded)

2011-03-17 Thread Ian Stokes-Rees
[Forwarded on behalf of organizers. You may need to be US-based to participate. They are specifically interested in contacting life sciences researchers.] Hello! We invite you and your colleagues to apply now for the 2011 OSG Summer School where you can learn to harness the power of distributed

Re: [ccp4bb] PDB data mining

2011-03-08 Thread Ian Stokes-Rees
On 3/8/11 5:44 PM, Cale Dakwar wrote: > > Hello all, > > For any given structure in the PDB, I want to identify all the > Histidine ND1 atoms. I then want to consider these atoms in pairs, > measure the distance in Angstroms between the ND1 atoms in each pair, > and compile these distances (alon

Re: [ccp4bb] CCP4 for iphones

2011-02-28 Thread Ian Stokes-Rees
On 2/25/11 5:41 PM, Nat Echols wrote: On Fri, Feb 25, 2011 at 2:10 PM, Sean Seaver wrote: I've been curious if there has been discussion about moving data processing and refinement to a software as a service

Re: [ccp4bb] CCP4 for iphones

2011-02-28 Thread Ian Stokes-Rees
In a sentence, primarily due to cost and power constraints mobile devices don't (currently) have the horsepower to do any serious *generic* number crunching, as would be required for anything of interest to this community. On the topic of using otherwise-idle compute time, our group has a publicly

Re: [ccp4bb] brute force MR

2010-12-10 Thread Ian Stokes-Rees
For anyone who is interested, I meant to include a reference to the PNAS paper that has just come out (web-only early release) describing the wide search MR strategy we've developed: Stokes-Rees, Sliz Protein structure determination by exhaustive search of Protein Data Bank derived databases Pr

Re: [ccp4bb] brute force MR

2010-12-10 Thread Ian Stokes-Rees
other computations are ahead of it in our queue, the complexity/resolution of your data set, space group, and unit cell size). Regards, Ian Stokes-Rees