Of course PBS should not be a first choice for screning crystal.
But I will try all kinds of buffer until I got the structure.
Nobady can tell you that you can't get crystal in the PBS buffer. and I will
shot everything I have if I have enough beam time.
Good luck.
for me, I prefer to sock these compounds into your crystal. it will much more
easy than co-crystallizaiton. But each protein should be different.
Normally when I star to co-crystallization with small compound, I will set up
the complex with 1:1.2 molar ratio as first trial to see what should hap
normaly you can do it in the pymol. In the main interface, on the left menu,
there is a:"A" button, click it, then looking for "Aliagn". Then you can do it.
But I prefer to use CCP4, in CCp4 there is a tool : Superpose. You can fine any
region you want to do superpose.
sometimes, a little bit change of concentration of your precipitate or pH
buffer can affect your crystal.
My suggestion is setup a appropriate gradient of your precipitate and additive.