Dear Akanksha Tomar,
By default, phenix.refine will assign a single occupancy for the ligand as long
as all atoms have the _same_ occupancy (0https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1
---
Dear all,
we have been experiencing severe issues with OneDep on the PDBe server(s) for
about four weeks now (starting 11 Jan).
Specifically, deposition sessions are randomly interrupted by "internal server
errors".
The PDB is certainly aware of the problem, but it is unclear when the server
w
Dear Paul,
>From my experience, I agree that an option to inactivate the anti-bumping
>restraints in RSR would be very useful.
To be honest, my impression is that it tends to be a hindrance rather than
helping, at least in cases where extensive rebuilding is required.
Best regards
Oliver
=
Hi,
You may want to check the number of "steps" used in re-centring.
This setting strongly affects the perceived speed ;-)
Best regards
Oliver
==
PD Dr. Oliver H. Weiergräber
Institut für Biologische Informationsprozesse
IBI-7: Strukturbioche
Dear Christian,
You obviously mean a _non-crystallographic_ trimer -- in a crystallographic
trimer the protomers (and their ligands) would be identical by definition.
On the other hand, chains related by non-crystallographic symmetry necessarily
differ in their environments. As a results of near
Note that the more recent versions of EL7 no longer require compositing to be
disabled for nVidia stereo to work with Gnome3.
Cheers,
Oliver
==
PD Dr. Oliver H. Weiergräber
Institute of Biological Information Processing
IBI-7: Structural Bioc
Indeed, update 54 from Mar 29 seems to have messed up several monomer
definitions and/or their handling in coot (the version distributed with ccp4):
- GLU and ASP contain lines referencing GLN and ASN, respectively, preventing
coot from finding any chi angles.
- For GLN, chi angles appear twice i
instrument parameters
(against a single sweep dataset from whatever crystal it sees), but
rather index, integrate and scale/merge the data collected and
described.
Anyway, just my 2 cents ;-)
Cheers
Clemens
On Wed, Jan 24, 2018 at 09:36:19AM +, "Weiergräber, Oliver H." wrote:
> a
FINE(IDXREF) does
not help, pls send me enough data to reproduce the problem.
best wishes,
Kay
On Tue, 23 Jan 2018 14:31:09 +, "Weiergräber, Oliver H."
wrote:
>Dear all,
>
>After upgrading XDS from build date 20170601 to 20171218, I am experiencing
>severe degrad
Dear all,
After upgrading XDS from build date 20170601 to 20171218, I am experiencing
severe degradation of apparent data quality reported by CORRECT for certain
data sets. Following first indications of issues with a slightly problematic
candidate, I went back to a previously very well-behaved
61 61-9540
From: David Waterman [dgwater...@gmail.com]
Sent: Friday, December 09, 2016 4:38 PM
To: Weiergräber, Oliver H.
Cc: CCP4BB@jiscmail.ac.uk
Subject: Re: [ccp4bb] Bug in latest COOT
Dear Oliver,
I just tried this on 1D2F using computers at Diamon
ct: Re: [ccp4bb] Bug in latest COOT
On 09/12/16 14:13, "Weiergräber, Oliver H." wrote:
> Hello,
>
> after installing the latest ccp4 updates today, I found that coot will
> consistently crash (core dump) if geometry analysis is run on _any_ structure
> containing an OXT a
stems
ICS-6: Structural Biochemistry
Tel.: +49 2461 61-2028
Fax: +49 2461 61-9540
From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of "Weiergräber,
Oliver H." [o.h.weiergrae..
Hello,
after installing the latest ccp4 updates today, I found that coot will
consistently crash (core dump) if geometry analysis is run on _any_ structure
containing an OXT atom.
Best regards
Oliver
PD Dr. Oliver H. Weiergräber
Institute of
Hello,
in the current CCP4 (latest patch level), xplot84driver does not work on
CentOS5. It requires libXaw.so.8, which is unavailable for that system.
This is most likely a bug.
Best regards,
Oliver
PD Dr. Oliver H. Weiergräber
Institute o
Dear colleagues,
I would like to point your attention to the following job opportunity -
professorship/director (W3) - which is jointly offered by the Forschungszentrum
Juelich and Heinrich Heine University Duesseldorf, Germany:
http://www.nature.com/naturejobs/science/jobs/243931
The focus of
I think the problem is related to the term "coherence" being used to describe
both the type of *radiation* and the mode of *scattering*.
When talking about (xray) radiation, it denotes the phase relationship between
photons, and therefore even a monochromatic beam can be incoherent (whereas a
po
I also observed the tcltk path problem when installing ccp4-6.2.0 on EL5
(CentOS 5 in this case). It happens if root is using tcsh instead of bash.
Notably, it must be a new bug introduced with the *revised* 6.2.0 packages. The
initial version (the one with the file permission problem) generated
Hello,
version 6.2.0 of ccp4 has strange permissions set to several
setup/configuration scripts which are read while sourcing ccp4.setup.
For a long time, ccp4 packages have been distributed with some arbitrary file
and directory ownerships which users are obviously supposed to edit to meet
th
Hello,
as to the WASP server: We found it to be very useful in the past, but the link
is no longer functional!
Is there any other address for accessing this server?
Oliver
PD Dr. Oliver H. Weiergräber
Institut für Strukturbiologie und Biophysik
20 matches
Mail list logo
