Re: [ccp4bb] Error message while refining protein-DNA complex structure in Refmac5

2009-03-16 Thread Yusuf Akhter
) 001 917 674 6266 (Mobile) Get your preferred Email name! Now you can @ymail.com and @rocketmail.com. http://mail.promotions.yahoo.com/newdomains/aa/ -- * Present Address: Yusuf Akhter, DAAD Fellow EMBL Hamburg c/o DESY

Re: [ccp4bb] Coot Problem! adding r-nucleotide in DNA

2009-02-26 Thread Yusuf Akhter
Thanks to Paul and Christian..for responding very quickly to my query. I tried all versions of coot and it worked in only ver 0.4. Now everything is fine. Cheers! Yusuf On Thu, Feb 26, 2009 at 7:04 PM, Yusuf Akhter yusuf.akh...@gmail.comwrote: Hi everybody! I am using coot version 0.5. I

Re: [ccp4bb] Refmac out-put file header information

2008-08-08 Thread Yusuf Akhter
: 12072 Have anybody some suggestions?? Thanks, yusuf -- Yusuf Akhter EMBL Hamburg c/o DESY, Notkestraße 85, 22603 Hamburg, Germany Thank you very much to Artem, Lijun, Dale and Paul for giving me great suggestions regarding my earlier query on D to L amino acid residues. Now one more problem

Re: [ccp4bb] Refmac out-put file header information

2008-08-08 Thread Yusuf Akhter
:[EMAIL PROTECTED] On Behalf Of Yusuf Akhter Sent: Friday, August 08, 2008 2:20 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Refmac out-put file header information Dear Mitch, I did not run uniqueify but i have added free-R flags by running xdsconv with extra command line in in-put file

[ccp4bb] Refmac out-put file header information

2008-08-07 Thread Yusuf Akhter
am using Refmac for refinement. My data is 95.4% of completeness at Signal/noise =-3. I noticed that in the header of out-put PDB file from Refmac shows 100% completeness. Is it a bug?? May somebody tell me where the problem is? Thanks in advance. yusuf -- Yusuf Akhter EMBL Hamburg c/o DESY

[ccp4bb] D-Amino acids to L-Amino acids

2008-08-02 Thread Yusuf Akhter
to L-amino acids?? Is there any option in Coot for that?? Thanks in advance, yusuf -- Yusuf Akhter EMBL Hamburg c/o DESY, Notkestraße 85, 22603 Hamburg, Germany - This mail sent through IMP: http://horde.org/imp/

[ccp4bb] D-Amino acids to L-Amino acids

2008-08-02 Thread Yusuf Akhter
to L-amino acids?? Is there any option in Coot for that?? Thanks in advance, yusuf -- Yusuf Akhter EMBL Hamburg c/o DESY, Notkestraße 85, 22603 Hamburg, Germany - This mail sent through IMP: http://horde.org/imp/