[ccp4bb] Hydrophobic/ vander waal forces

2021-07-02 Thread amit gaur
propensity to form these interactions? Thank you, -- *Dr. Amit Gaur* *Research AssociateThomas Jefferson University* *Department of Translational medicine* *1020, Locust Street, Jefferson Alumni Hall* *Philadelphia, PA 19107

[ccp4bb] hydrophobic forces

2020-10-25 Thread amit gaur
Hi All, I have a question that, I have a loop region with hydrophilic residues(TNETRERE) that lie close to methionine. Can, repulsive forces may occur because between methionine and hydrophilic residues? -- *Dr. Amit Gaur* *Post Doctoral Researcher* *Thomas Jefferson University

[ccp4bb] Homology modeling

2020-08-14 Thread amit gaur
Hi All, I am trying to generate a model using comparative modeling. Can anybody suggest the quality of the model based on procheck summary. +--<<< P R O C H E C K S U M M A R Y >>>--+ |

Re: [ccp4bb] technical question

2019-12-01 Thread amit gaur
Thanks every one. I tried this and worked pretty well. On Fri, Nov 29, 2019 at 4:42 PM Robbie Joosten wrote: > Or use the residue name MHO if SME has the wrong hand around the sulfur. > > Cheers, > Robbie > > On 29 Nov 2019 21:47, Paul Emsley wrote: > > On 29/11/201

[ccp4bb] technical question

2019-11-29 Thread amit gaur
Hi everbody, I want to replace a particular methionine in a pdb with methionine sulfoxide( an oxidized form of methionine). Can body please tell me how to do this? I am familiar with pymol, chimera and coot software. -- *Amit Gaur* *Post Doctoral ResearcherThomas Jefferson University* *1020

[ccp4bb] Dimer in SDS-PAGE

2017-02-21 Thread amit gaur
as a tetramer which is common oligomerizaton of potassium channel family with GYG motif. Can any body suggest what should I do in this case? Thanks and regards, -- *Dr. Amit Gaur* *Post Doctoral ResearcherPI: Dr. Ji-Fang ZhangThomas Jefferson University* *1020, Locust Street, Suite 418