[ccp4bb] Postdoctoral position in Case Western Reserve University

://pharmacology.case.edu/department/faculty/primary/Pages/dealwis.aspx* <http://pharmacology.case.edu/department/faculty/primary/Pages/dealwis.aspx> *https://www.ncbi.nlm.nih.gov/pubmed/?term=Chris+Dealwis* <https://www.ncbi.nlm.nih.gov/pubmed/?term=Chris+Dealwis> -- Intekhab Alam

[ccp4bb] modelling a flexible peptide

s one by one but the B-factor of the segments are quite high (in the range of 110) what will be the best strategy to improve the map for modelling. regards -- INTEKHAB ALAM LABORATORY OF STRUCTURAL BIOINFORMATICS KOREA UNIVERSITY, SEOUL

[ccp4bb] change in unit cell parameters and difficult MR

problem. i already have tried different templates like monomer, dimer, trimer, tetramer etc with truncations of loop region. i am using phaser as well as molrep programs. Regards -- INTEKHAB ALAM LABORATORY OF STRUCTURAL BIOINFORMATICS KOREA UNIVERSITY, SEOUL

Re: [ccp4bb] unidentified density

. 4. use of buccaneer. i will post again once i get a reasonable model. regards intekhab alam On Fri, Feb 10, 2012 at 8:58 PM, Eleanor Dodson wrote: > On 02/10/2012 07:35 AM, intekhab alam wrote: > >> Hi all >> I have a 3A dataset for a protein-protein complex. I have success

[ccp4bb] brainpool research associate position

ation, age, religion and belief or another protected characteristic. -- INTEKHAB ALAM LABORATORY OF STRUCTURAL BIOINFORMATICS KOREA UNIVERSITY, SEOUL

[ccp4bb] strange MR problem

mtz file from ccp4 the model shows a lot of clashes. what kind of approach should i take so as to resolve this ambiguity. Regards -- INTEKHAB ALAM LABORATORY OF STRUCTURAL BIOINFORMATICS KOREA UNIVERSITY, SEOUL

[ccp4bb] MR problem

protein. regards -- INTEKHAB ALAM LABORATORY OF STRUCTURAL BIOINFORMATICS KOREA UNIVERSITY, SEOUL

Re: [ccp4bb] protein aggregation

o as to increase the concentration of the protein? > I have some idea of adding EDTA and charged amino acids like L-Arg and > L-Glu. > I would appreciate if the readers share their experiences. > > Thanks! > > Gauri > > -- INTEKHAB ALAM LABORATORY OF STRUCTURAL BIOINFORMATICS KOREA UNIVERSITY, SEOUL

[ccp4bb] exo and endo conformation

o conformations. any other suggestions are also welcome. regards and thanks in advance, -- INTEKHAB ALAM LABORATORY OF STRUCTURAL BIOINFORMATICS KOREA UNIVERSITY, SEOUL

[ccp4bb] SC

I want to calculate the shape comlementarity statitics (SC) of a dimeric protein using CCp4. I am using CCP4 6.1.3 on windows but the SC program is not available in that suite. Which version of CCP4 has that program. Are there any other programs that can calculate that. Thanks -- INTEKHAB ALAM

[ccp4bb] pseudotranslation in C2 space group

Hi, There 1.I have collected two data sets one for the native protein (60Kda) and complex of native with other protein of 8 Kda. The shape of native dataset is cubic while that of the complexed one is triangular. A number of dataset were collected for these two and i successfully indexed them to a

[ccp4bb] Difference map

. why is such discrepency in the two cases, is there is something missing from the calculation. kindly help me out. Thanks and regards Intekhab alam -- INTEKHAB ALAM LABORATORY OF STRUCTURAL BIOINFORMATICS KOREA UNIVERSITY, SEOUL

Re: [ccp4bb] monomer-dimer

Dear That was a quite enlightening discussion!! I am grateful to you guys for your time!! I will definitily try some of these to get a clear answer. Regards Intekhab alam On Tue, Aug 10, 2010 at 8:38 AM, Bostjan Kobe wrote: > Dear Intekhab > > Let me just add to this that gel filtrati

[ccp4bb] monomer-dimer

otherway to do gel filtrtaion so that i can clearly resolve this issue. Also let me know if there is some literature available on effect of temperature on the elution volume of proteins. Thanks in advance -- INTEKHAB ALAM LABORATORY OF STRUCTURAL BIOINFORMATICS KOREA UNIVERSITY, SEOUL

[ccp4bb] molecular replacement

, too. Please, give me any suggestion. Should I concern about any options when I run MR programs? Hope you guys will be interested to answer!! Thanks in advance -- INTEKHAB ALAM LABORATORY OF STRUCTURAL BIOINFORMATICS KOREA UNIVERSITY, SEOUL

[ccp4bb] complex

not stabilised. Can anyone suggest me something to get out from this. I am stuck at this stage. suggestion are highly welcomed and appreciated. -- INTEKHAB ALAM LABORATORY OF STRUCTURAL BIOINFORMATICS KOREA UNIVERSITY, SEOUL

[ccp4bb] research position in korea

You are invited to apply for a brain pool scientist position in the field of structural biology under Professor Kyung Hyun Kim of Korea University. The research project will focus on the structure of viral infectious disease proteins and is funded by the Brainpool initiative program of Korean Fe

[ccp4bb] advertisemnet for the research scientist position in Korea

2010 by 6 P.M. Kyung Hyun Kim, Professor Structural Bioinformatics Lab Korea University Sejong Campus Phone 82 2 3290 3444; Mobile 82 10 9014 1416 http://sbl.korea.ac.kr/ Email: kh...@korea.ac.kr -- INTEKHAB ALAM LABORATORY OF STRUCTURAL BIOINFORMATICS KOREA UNIVERSITY, SEOUL

[ccp4bb] ligand modelling

improve or fine tune my map around the ligand so that i can get rid of this positive and negative density (i already have tried different binding modes. Thanks -- INTEKHAB ALAM LABORATORY OF STRUCTURAL BIOINFORMATICS KOREA UNIVERSITY, SEOUL