There seems to be a list of the 7.0 programs (and documentation!) still
available:
http://www.ccp4.ac.uk/html/FUNCTION.html
I hope this is not going away!
eab
On 07/07/2020 12:09 PM, Tim Gruene wrote:
Dear Kelvin,
the command 'ls $CBIN' lists the majority of CCP4 programs on your
system. This probably even works under Windows 10, since the powershell
acts like a linux/unix shell.
Best regards,
Tim
On Tue, 7 Jul 2020 16:00:18 +0000
Lau Kelvin <kelvin....@epfl.ch> wrote:
Ah I see! Great I can run it that way
And yes, Eleanor, after I realized that list was gone, I was
panicking that there are some random things I used to do with those
programs would no longer be possible. Good to know that the command
line versions are still there in the 7.1 distro.
Best,
Kelvin
--
Kelvin Lau
https://people.epfl.ch/kelvin.lau
Protein production and structure core facility - PTPSP
EPFL SV PTECH PTPSP
AI 2146 (Bâtiment AI)
Station 19
CH-1015 Lausanne
Switzerland
Email: kelvin....@epfl.ch<mailto:kelvin....@epfl.ch>
Phone: +41 21 69 30267<tel:+41%2021%2069%C2%A030267>
If unreachable: +41 21 69 34494<tel:+41%2021%2069%C2%A030267>
On 07.07.20, 15:51, "CCP4 bulletin board on behalf of Christian Roth"
<CCP4BB@JISCMAIL.AC.UK<mailto:CCP4BB@JISCMAIL.AC.UK> on behalf of
christianroth...@gmail.com<mailto:christianroth...@gmail.com>> wrote:
....yes Eleanor is right. command line still works.:-)
fft is also in 7.1 distribution.
On Tue, Jul 7, 2020 at 3:43 PM Eleanor Dodson
<eleanor.dod...@york.ac.uk<mailto:eleanor.dod...@york.ac.uk>> wrote:
Oh Lau - how I miss that list! But if you just run fft online it is
still distributed..wombat:Downloads eleanor$
fft hklin .... mapout ....
LABIN FP= and so on..
On Tue, 7 Jul 2020 at 14:22, Christian Roth
<christianroth...@gmail.com<mailto:christianroth...@gmail.com>>
wrote: Hi Kelvin, well fft as single program is kind of not longer
supported as is not ccp4i. In i2 internally, as well in communication
with mg or coot, everything is done using map coefficients. Their are
two options: First via i2: Use the unusual map coefficients Task and
choose not to compare maps, but to generate the map coefficients plus
a map (button is in Advanced tab) the standard grid parameters can be
changed, but are actually optimized already. Second just save the map
out of Coot (Export map)
To avoid redundancy, the old fft task was discontinued. i2 works with
coefficients, which generates smaller files and Coot provides all the
functions to generate the map and is its own gui.
Hope that explains a bit why things are how they are now.
Cheers
Christian
On Tue, Jul 7, 2020 at 1:56 PM Lau Kelvin
<kelvin....@epfl.ch<mailto:kelvin....@epfl.ch>> wrote: Hi Christian,
I was in particular looking for the fft program (I couldn’t find that
using the method you described) just to convert an mtz into a .map.
Before in version 7.0 I could just browse all programs, now it seems
like I cannot do that (other than using the filter, and some seem to
be missing)
At the end I just used mtz2map in phenix.
--
Kelvin Lau
https://people.epfl.ch/kelvin.lau
Protein production and structure core facility - PTPSP
EPFL SV PTECH PTPSP
AI 2146 (Bâtiment AI)
Station 19
CH-1015 Lausanne
Switzerland
Email: kelvin....@epfl.ch<mailto:kelvin....@epfl.ch>
Phone: +41 21 69 30267<tel:+41%2021%2069%C2%A030267>
If unreachable: +41 21 69 34494<tel:+41%2021%2069%C2%A030267>
On 06.07.20, 13:34, "Christian Roth"
<christianroth...@gmail.com<mailto:christianroth...@gmail.com>> wrote:
Hi Kelvin,
not quite sure if I understand you correctly, but if you press the
Task Manager button you get on the right sight a list of topics
(import data, Molecular Replacemnt etc.) each point can be open up
like a file tree to see all programs or pipelines available. You can
search with the search field (Filter) on top for specific program
names. Does that help?
Cheers
Christian
On Mon, Jul 6, 2020 at 1:15 PM Lau Kelvin
<kelvin....@epfl.ch<mailto:kelvin....@epfl.ch>> wrote: Hello,
I am looking for a way to find the list of programs accessible using
the new 7.1 CCP4I2 interface? Is this still possible or do I have to
revert back to version 7.0?
Best regards,
Kelvin
--
Kelvin Lau
https://people.epfl.ch/kelvin.lau
Protein production and structure core facility - PTPSP
EPFL SV PTECH PTPSP
AI 2146 (Bâtiment AI)
Station 19
CH-1015 Lausanne
Switzerland
Email: kelvin....@epfl.ch<mailto:kelvin....@epfl.ch>
Phone: +41 21 69 30267<tel:+41%2021%2069%C2%A030267>
If unreachable: +41 21 69 34494<tel:+41%2021%2069%C2%A030267>
________________________________
To unsubscribe from the CCP4BB list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1
________________________________
To unsubscribe from the CCP4BB list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1
________________________________
To unsubscribe from the CCP4BB list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1
########################################################################
To unsubscribe from the CCP4BB list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1
This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a
mailing list hosted by www.jiscmail.ac.uk, terms & conditions are
available at https://www.jiscmail.ac.uk/policyandsecurity/
########################################################################
To unsubscribe from the CCP4BB list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1
This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list
hosted by www.jiscmail.ac.uk, terms & conditions are available at
https://www.jiscmail.ac.uk/policyandsecurity/
