Re: [ccp4bb] BSA as additive

2017-05-09 Thread Avinash Punekar
Dear H.Sin, These references may help you: Meireles, M., Aimar, P., and Sanchez, V. (2004) Albumin denaturation during ultrafiltration: effects of operating conditions and consequences on membrane fouling, Biotech. Bioeng. 38, 528-534. Schratter, P., (2004) Purification and concentration by

Re: [ccp4bb] BSA as additive

2017-05-08 Thread Keller, Jacob
@JISCMAIL.AC.UK Subject: Re: [ccp4bb] BSA as additive I haven't used BSA, but I did recently use 50mM L-glutamic acid for this exact reason (and 5% glycerol in all buffers except the last one for crystallography) after reading this paper and it made a big difference to my last protein prep: https

Re: [ccp4bb] BSA as additive

2017-05-08 Thread Evans, Nicola
C.UK Subject: [ccp4bb] BSA as additive Dear CCP4BB members, Sorry about my non crystallography question. Does anyone know of a reference where BSA has been used as an "additive" in the protein concentration step to prevent aggregation of the main protein? I would appreciate your suggestions. Thank you, H.Sin

Re: [ccp4bb] BSA as additive

2017-05-08 Thread Briggs, David C
bulletin board <CCP4BB@JISCMAIL.AC.UK> on behalf of Ha Sin <haab...@gmail.com> Sent: 08 May 2017 13:32:44 To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] BSA as additive Dear CCP4BB members, Sorry about my non crystallography question. Does anyone know of a reference where BSA has been used as

Re: [ccp4bb] BSA as additive

2017-05-08 Thread Briggs, David C
on behalf of Ha Sin <haab...@gmail.com> Sent: 08 May 2017 13:32:44 To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] BSA as additive Dear CCP4BB members, Sorry about my non crystallography question. Does anyone know of a reference where BSA has been used as an "additive" in the protein

[ccp4bb] BSA as additive

2017-05-08 Thread Ha Sin
Dear CCP4BB members, Sorry about my non crystallography question. Does anyone know of a reference where BSA has been used as an "additive" in the protein concentration step to prevent aggregation of the main protein? I would appreciate your suggestions. Thank you, H.Sin

[ccp4bb] BSA

2010-05-26 Thread Sollepura Yogesha
Dear All, I am trying to calculate BSA (Buried surface area) for a protein complex. I am using CCP4 AreaIMol. I used Accessible surface area module and calculate areas for protein atoms only I know that the buried surface area (BSA) can be calculated as: BSA = ASA(A) + ASA(B) - ASA(AB)

Re: [ccp4bb] BSA

2010-05-26 Thread Ed Pozharski
You should take a look at DIFFMODE COMPARE keyword in AREAIMOL manual, it allows for buried surface area calculation (you have to prepare the two pdb files with complex and receptor only). If you can easily use command line and scripts (i.e. you are running CCP4 on non-micro$oft OS), try the

Re: [ccp4bb] BSA

2010-05-26 Thread Eugene Krissinel
PISA's interface area is 1/2 of sum BSAs for the interfacing structures. If you go to interface details, you also get total area of structures and their individual BSAs. The latter I should think would be an overinterpretation if used. Eugene. On Wed, May 26, 2010 at 1:45 PM, Sollepura Yogesha